Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181279g00017 ATGCCGGACGGTGAATCATCGTCCGCCACGTCATCGTCGGAGCTGGAGCCCCATTTAAGCCTCGCTGATCAGTTGCCCCAGAACCTTAGTCTCTCTGAAGTCAAAGATCATGACGACCCAGCTGTTAAGAAAGATCCCAAGAAAATTGCCAGAAGGTACCAGTTGGAGCTGTGCAAGAAAGCATTAGAGGAAAATATAATTGTATATTTGGGGACAGGTTGTGGGAAGACCCACATTGCTGTGCTGCTTATGCATGAAATGGGTCATTTGATAAGGAAGCCCCAGAAAAATGTATGTGTTTTTCTTGCCCCCACTGTGGCACTTGTTCATCAGCAAGCGAAGGTTATAGAAGACTCTACTGATTTCAAGGTTGGGATTTTCTGTGGGAGCACCAAGCGCTTGAAACGTCATCATGATTGGGAGCAGGAAATTGGACAATATGAGGTTATTGTCATGACCCCACAGATATTATTGCACAACTTATCTCATTGTTTCATTAGGATGGAGATGATTTCACTTTTGATATTTGATGAATGTCATCATGCTCAAGTCAAAAGCAACCATCCTTATGCAGAAATCATGAAAGTCTTCTACAAAAATAATTCCGAAAGTGCTCCTCGTATATTTGGCATGACTGCTTCCCCAGTTGTAGGAAAAGGGGCCTCTAGTGAAGCAAATCTTGGAAAAAGCATCAATAGTCTTGAACAAATACTTGATGCTAAGGTATACTCAGTTGAAGACAAGGAATTGCAATCTTTTGTAACGAATGCAATGATTTCTGTATATCATTATAGCTCAGTTGCAAATGGGATAGCTAGTTTGTATACAGCTTACTATGCAGGACTTGAGGAGATCAAACATCAGTGCATAGCAACCCTTGGTAGGAATATAGAAGATCACCAGAAACGGATGAACACAAAAAAACTTCTAAACCGGATACATGATAATGTTGTTTTCTGCCTGAGGAATCTTGGCATTTGGGGAGGACTGCAAGCTAGTCATATTCTTTTGAGGGGCGATCGTTCCGAGAGGCATGAATTATTGGAGGCAGAAGGAAATTCAAGTGATGACTCTCTGTGTGATAAATATCTTTCTCAGGCAGCTGAACTCTTTAACTCACTTCTGAAAGGTGACAGTTTATCTGATTTACCTTCTACGGAAATATTGAGAGAGCCCTTTTTCTCGTCAAAACTTTTGCGCCTCGTTCAGATACTATCCTCCTTTAGAATCGTGACTGCAAGATCCCTGTCATACATACTTAAGAAGATGAAACTTCTAACACAATGGAGGAGTGATTTTCTAGTAGGAGTCCATGCTGGTCTGAAGAGTATGTCGCGCAAAACTATGAACATCATTGTTGAGAAGTTTCGCTCTGGTGAGTTGAATCTATTGGTTGCAACAAAAGTGGGTGAAGAAGGACTTGACATTCAGACTTGTTGCCTTGTCATACGGTTTGATCTTCCTGAAACTGTTGCCAGCTTTATACAGTCAAGAGGCCGTGCACGAATGCCTCAGTCAGAATATGCGTTTTTGGTGGACAGTGGCAATAAGAAGGACCTTGATTTAATTGATGGCTTTGAGAAAGATGAATGCCGAATGAATATGGAAATTGTTGATCGCACATCAACTGAGACATACATAATCCCTGAGGAAAGAATATTCAGAGTAGATTCGTCCGGTGCTTCTGTCAGTTCTGGATATAGTATTTCATTACTTCACCAGTATTGTTCAAAGCTTCCACATGATGAGTTCTTTGATCCCAAGCCAAACTTTTATTACTTTGATGAAAAGGATGGGATCGTCTGCCACATAATATTTCCATCCAATGCACCAATACACTTAATTGTCGGTTCACCACAGTTGTCTATGGAAGCTTCCAAAAAGGATGCTTGCCTGAAAGCAATCCAAGAACTGTATGAAAAAGGTGCTTTAAGTGATTGTCTTTTGCCAAAGCAAGAGACCACAGAGCCAGACGAGAAGGATTCAAGCCCAAATACGGACAGCTGCGAAGATGACAATTCAAGAGGAGAATTACATCAGATGTTAGTTCCTTCTACCTTTAGAAAGTCTTGGATAAACGAAGAGGAAAATGTTCATCTCAACTCATACTACATAAAATTTTGTCCCTTGCCAGAGGATAGGGTTTACAAAAAGTTTGGTCTATTCATCATGACACGTCTTCCAGCAGAGGCTGAGAAACTGGAACTTGATCTTCATCTTGCTCATGGTAGATCTGTTATGACAACATTTGTTCCATTTGGAGTTATAGAATTTGACAAACATGAGATTAAGATGGCCGAACATTTTCAAGAGATGTTCCTTAAAATTATTCTTGACCGATCAGAATTTGTTTCTGATCTCGTAACCCTGACTAAGGGTGCTGAATCTCATGGCAGCTCATCAACCTTCTACCTTATGCTTCCAGTGAATTTGCATGAATATGAAAATATCATGACTGTGGATTGGAAGACTGTGAGGAGATGCCTTTGTTCACCAATTTTCAAGCTTCCACTAGATGCTGTGGCCCAAAACTCTTACCCTTTCGATTCATCACTTCAACTTGCTGATGGTAAAAGAAGCATAAGAGATGTTGAAAATAGTTTGGTATATGCCACACACAAAGAGCTCTTTTATTTTGTCACAAATGTAACCCATGGAAAAAATGGATTTAGTCCATGTAATGATTCAGGCACTTCAAGCTATGCAGATGACTTGGTTGAAAAGTTTTCTATTCGTCTCAAACACCCTGAGCAACCACTTCTGCGTGCAAAACCACTTTTCAATCTGCACAACTTGCTACATAATCGGAAGTTTGAGGATACAGAGCCGCATGAGCTGGAGGAGTTCTTTGTTGATTTGGCTCCTGAGCTTTGTGAATTGAAAGTAGTAGGCTTTTCAAAGGAGATGGGTAGTTCCATATCTTTGTTACCCTCGGTTATGCATCGGCTGGGAAACTTACTGGTTGCTGTTGAACTGAAGCAAATGCTGTGTAGTTTCTTCCCAGAGGCAGCTGAAATTAATTCCCATACAGTTCTTGAGGCTCTCACAACTGAGAAGTGTCAGGAACGCTTTTCACTTGAAAGATTGGAAGTGCTTGGAGATGCTTTTCTCAAATTTGCTGTTGCACGCCATTTTTTTCTCACATGTGACAGTCTTCATGAAGGAGACCTTACTGCTAAGCGTTCCAATGTTGTAAATAATTCCAATTTGTATAAGTTGGCTCTTAGACGCAATTTGCAGGTCTACATACGTGATCAGGCATTTGATCCCTCTCAATTCTATGCATTTGGTCGTCCTTGCCCGAGAGTTTGTAACAATGAAACAGAAGAAAGTATACACTCATGTTTAAATTCTGTTAAGGAGCAAGGAAGCTCAACTCAAATCCAGTGCAGTAAAAATCACCACTGGTTATATAGAAAAACAATTGCCGATGCTGTTGAAGCTTTGGTTGGAGCATTTATTGTTGATAGTGGCTTTAAAGCTGCAATTGCATTTCTTACGTGGCTCGGCATACAAGTTAATTTTGATGCCTCACAATTGATTAGTGTTTGCCAAGGAAGTGTTGGCTATATTCCTCTCTCTGCTGATGTAAACATTCCTTCCCTCGAAGATAAGTTGGGATATCACTTCGTTCATAAGGGTCTGCTTCTTCAGGCATTTGTGCACCCTTCTTACAATAAGCATGGAGGAGGTTGCCACCAGCGACTGGAGTTTCTTGGAGATGCTGTGCTGGATTTTTTGATTACTTCATACCTATACTCAGCTTATCCAAAGCTGAAGCCTGGCCAATTGACAGATTTGAGATCTTTGTCTGTTAACAATAAGGCATTTGCCTGTGTTGCTGTGGATCGCAGTTTTGATAAATTTCTTTTATGCGATTCTAGCAGCCTTTCTGAGGCAGTAAAAAAATACGTGGACTATATTAGCAGGCCTTCATCAAGTAGTGTCAATGAAGGGCCGAAATGTCCAAAGGCCTTGGGTGACTTGGTGGAATCTTGTGTTGGCGCTATTCTTCTTGATTCAGGGTTCAATTTGTACAAAGTTTGGGAAATAATGACTTCATTCTTGGACCCAATCATGAAATTCTCATCTAGCTTGCAGCTTAGTCCAAAGAGGGATCTGCAAGAACTCTGCCAATCTCATAATTTGGATTTGCAACTCCAAGCAACGAAATTAACTAAAACATTTTCAGTTGAAGCAAAAGTGACTGTGAACGGAATATGTCGAACAGCTGTGGCGACCGGCCAAAGTATAAAAGAGGCGACTAGAATTGCTTCACAGAAACTATTTTCAGAGCTAAAGGCTCAAGGCTGGAGACCAAGGTCAAAACCTTTGGAAGAAGTTCTAAAATCTACCTTTAAGGGGAAAGCAAAACTTATTGGCTATAATGAAACTCCCATTGATGTAACAGCAATTAATCCCATTGAGCACGTAACGGTTAATGGGGACTTAAGCAGCAAGTCAAACCCGATAATTCGCCCCCTCCGTGAGGTGATTGGTATAAAACCTGTTGACCGACAGTTTCAACATTCTTCTATGGGAAAGCCTAGCAGAACTTGTGATAATAATGATAGTGATGGCGATTTATCAAGGACAGATTGTTCATTCAAAGGAACTGCAAGATCACGATTGTATGAATTCTGTGCTGCTTCTTGCTGGAAACCACCAACATTTGAGTGCTGCAATGAAGGGGGACCGGATCACATGAAGTCATTCACATACAAGGTGACCTTGGACATAGAAGAATCCCCAGATGTGATTTATGAATTCATTGGGGAACCAAAACCAAAGAAGAAAGACGCAGCAGAGTGCGCGGCTGAGGGTGTGTTTTGGTACCTGCAACATGAAGGTTACCTGTCTAAGCGCTACCGAACTGACTCATAA 4884 0.4105 MPDGESSSATSSSELEPHLSLADQLPQNLSLSEVKDHDDPAVKKDPKKIARRYQLELCKKALEENIIVYLGTGCGKTHIAVLLMHEMGHLIRKPQKNVCVFLAPTVALVHQQAKVIEDSTDFKVGIFCGSTKRLKRHHDWEQEIGQYEVIVMTPQILLHNLSHCFIRMEMISLLIFDECHHAQVKSNHPYAEIMKVFYKNNSESAPRIFGMTASPVVGKGASSEANLGKSINSLEQILDAKVYSVEDKELQSFVTNAMISVYHYSSVANGIASLYTAYYAGLEEIKHQCIATLGRNIEDHQKRMNTKKLLNRIHDNVVFCLRNLGIWGGLQASHILLRGDRSERHELLEAEGNSSDDSLCDKYLSQAAELFNSLLKGDSLSDLPSTEILREPFFSSKLLRLVQILSSFRIVTARSLSYILKKMKLLTQWRSDFLVGVHAGLKSMSRKTMNIIVEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSGNKKDLDLIDGFEKDECRMNMEIVDRTSTETYIIPEERIFRVDSSGASVSSGYSISLLHQYCSKLPHDEFFDPKPNFYYFDEKDGIVCHIIFPSNAPIHLIVGSPQLSMEASKKDACLKAIQELYEKGALSDCLLPKQETTEPDEKDSSPNTDSCEDDNSRGELHQMLVPSTFRKSWINEEENVHLNSYYIKFCPLPEDRVYKKFGLFIMTRLPAEAEKLELDLHLAHGRSVMTTFVPFGVIEFDKHEIKMAEHFQEMFLKIILDRSEFVSDLVTLTKGAESHGSSSTFYLMLPVNLHEYENIMTVDWKTVRRCLCSPIFKLPLDAVAQNSYPFDSSLQLADGKRSIRDVENSLVYATHKELFYFVTNVTHGKNGFSPCNDSGTSSYADDLVEKFSIRLKHPEQPLLRAKPLFNLHNLLHNRKFEDTEPHELEEFFVDLAPELCELKVVGFSKEMGSSISLLPSVMHRLGNLLVAVELKQMLCSFFPEAAEINSHTVLEALTTEKCQERFSLERLEVLGDAFLKFAVARHFFLTCDSLHEGDLTAKRSNVVNNSNLYKLALRRNLQVYIRDQAFDPSQFYAFGRPCPRVCNNETEESIHSCLNSVKEQGSSTQIQCSKNHHWLYRKTIADAVEALVGAFIVDSGFKAAIAFLTWLGIQVNFDASQLISVCQGSVGYIPLSADVNIPSLEDKLGYHFVHKGLLLQAFVHPSYNKHGGGCHQRLEFLGDAVLDFLITSYLYSAYPKLKPGQLTDLRSLSVNNKAFACVAVDRSFDKFLLCDSSSLSEAVKKYVDYISRPSSSSVNEGPKCPKALGDLVESCVGAILLDSGFNLYKVWEIMTSFLDPIMKFSSSLQLSPKRDLQELCQSHNLDLQLQATKLTKTFSVEAKVTVNGICRTAVATGQSIKEATRIASQKLFSELKAQGWRPRSKPLEEVLKSTFKGKAKLIGYNETPIDVTAINPIEHVTVNGDLSSKSNPIIRPLREVIGIKPVDRQFQHSSMGKPSRTCDNNDSDGDLSRTDCSFKGTARSRLYEFCAASCWKPPTFECCNEGGPDHMKSFTYKVTLDIEESPDVIYEFIGEPKPKKKDAAECAAEGVFWYLQHEGYLSKRYRTDS 1627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181279g00017 1627 PANTHER DICER-RELATED 63 1438 - -
Stsc181279g00017 1627 ProSitePatterns Ribonuclease III family signature. 1234 1242 IPR000999 GO:0004525|GO:0006396
Stsc181279g00017 1627 Gene3D - 1546 1615 - -
Stsc181279g00017 1627 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1369 1435 IPR014720 -
Stsc181279g00017 1627 Gene3D - 387 540 IPR027417 -
Stsc181279g00017 1627 ProSiteProfiles Ribonuclease III family domain profile. 976 1158 IPR000999 GO:0004525|GO:0006396
Stsc181279g00017 1627 CDD RIBOc 1215 1364 IPR000999 GO:0004525|GO:0006396
Stsc181279g00017 1627 ProSiteProfiles PAZ domain profile. 892 962 IPR003100 GO:0005515
Stsc181279g00017 1627 FunFam Endoribonuclease dicer-like 1 563 659 - -
Stsc181279g00017 1627 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 517 IPR027417 -
Stsc181279g00017 1627 Gene3D Dicer dimerisation domain 564 661 IPR038248 -
Stsc181279g00017 1627 Gene3D Ribonuclease III domain 1004 1169 IPR036389 GO:0004525|GO:0006396
Stsc181279g00017 1627 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1540 1614 - -
Stsc181279g00017 1627 SMART PAZ_2_a_3 839 988 IPR003100 GO:0005515
Stsc181279g00017 1627 FunFam Endoribonuclease dicer-like 1 1193 1363 - -
Stsc181279g00017 1627 SUPERFAMILY dsRNA-binding domain-like 1324 1434 - -
Stsc181279g00017 1627 Pfam PAZ domain 862 983 IPR003100 GO:0005515
Stsc181279g00017 1627 SUPERFAMILY dsRNA-binding domain-like 1539 1620 - -
Stsc181279g00017 1627 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 57 233 IPR014001 -
Stsc181279g00017 1627 CDD DEXHc_dicer 48 247 - -
Stsc181279g00017 1627 Pfam Helicase conserved C-terminal domain 423 502 IPR001650 -
Stsc181279g00017 1627 SUPERFAMILY RNase III domain-like 1197 1360 IPR036389 GO:0004525|GO:0006396
Stsc181279g00017 1627 CDD DSRM_DCL_plant 1546 1615 - -
Stsc181279g00017 1627 Gene3D paz domain 855 960 - -
Stsc181279g00017 1627 SMART ultradead3 46 251 IPR014001 -
Stsc181279g00017 1627 SMART helicmild6 414 504 IPR001650 -
Stsc181279g00017 1627 SMART DRBM_3 1540 1614 IPR014720 -
Stsc181279g00017 1627 SMART DRBM_3 1370 1434 IPR014720 -
Stsc181279g00017 1627 CDD RIBOc 1012 1169 IPR000999 GO:0004525|GO:0006396
Stsc181279g00017 1627 Gene3D - 1369 1441 - -
Stsc181279g00017 1627 ProSiteProfiles Ribonuclease III family domain profile. 1199 1342 IPR000999 GO:0004525|GO:0006396
Stsc181279g00017 1627 Pfam DEAD/DEAH box helicase 52 213 IPR011545 GO:0003676|GO:0005524
Stsc181279g00017 1627 MobiDBLite consensus disorder prediction 653 675 - -
Stsc181279g00017 1627 SMART riboneu5 1214 1365 IPR000999 GO:0004525|GO:0006396
Stsc181279g00017 1627 SMART riboneu5 1009 1178 IPR000999 GO:0004525|GO:0006396
Stsc181279g00017 1627 Gene3D - 48 275 IPR027417 -
Stsc181279g00017 1627 MobiDBLite consensus disorder prediction 1507 1528 - -
Stsc181279g00017 1627 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 568 658 IPR005034 GO:0016891
Stsc181279g00017 1627 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 400 539 IPR001650 -
Stsc181279g00017 1627 Hamap Ribonuclease 3 [rnc]. 1202 1430 IPR011907 GO:0003723|GO:0004525|GO:0006364
Stsc181279g00017 1627 Gene3D Ribonuclease III domain 1196 1368 IPR036389 GO:0004525|GO:0006396
Stsc181279g00017 1627 FunFam Endoribonuclease dicer-like protein 45 281 - -
Stsc181279g00017 1627 SUPERFAMILY RNase III domain-like 1007 1173 IPR036389 GO:0004525|GO:0006396
Stsc181279g00017 1627 Pfam Ribonuclease III domain 1234 1342 IPR000999 GO:0004525|GO:0006396
Stsc181279g00017 1627 Pfam Ribonuclease III domain 1027 1158 IPR000999 GO:0004525|GO:0006396
Stsc181279g00017 1627 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1539 1615 IPR014720 -
Stsc181279g00017 1627 Pfam Dicer dimerisation domain 568 654 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181279g00017 Stsc-Chr181279 79506 90791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181279g00017 412 501 Eukaryotic Initiation Factors Gene Family AT3G19760 33.333 1.55e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181279g00017 K11592 - gmx:100818702 2459.87