Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181279g00011 ATGGCTTTCCACGAGCACCATATGCAGCACGAGATAGCTTTCCAGCGCTTCACGGAGCAAGAGCTTACAACGGAGAATAGAGACATGCAGCAGCAGAGGGCGGGGGTGGTTGCGCCGCCTCCGCCGACGTGGCTCAACAACCCTAGGCAGCAGCAGAATTTCCTACACCAGCTTCAGCCGCAACCACCGCCACCGCCGGAGACGGCGGAGAAGAGCATGGATCGGAACACAAGTTTTGAATCGTCGGATGAATTGAGAGAATACAAAGCAGACATCTTAGGACACCCGCTGTACGACCAGCTTCTGTCGGCTCACGTTTCGTGCCTGAGAATCGCCACGCCGGTTGACCAGCTTCCAAGAATTGACGCTCAGCTGCATCAGTCGCAGCGCGTGGTGGATAAGTACTCCGCCATCGCAAACCCGGTCGTCGATGACAAGGAGCTCGATCACTTCATGACACATTATGTGCTGCTGCTATGTGCTTTCAAAGAACAGTTGCAGCAACATGTTCGTGTTCATGCCATGGAAGCAGTGATGGCTTGTTGGGATCTCGAGCAATCTCTACAAAGCTTGACAGGTGTATCTCCTGGGGAAGGAACGGGAGCAACAATGTCCGACGACGAAGATGAGCAAGCGGAGAGCAACGGCGGCGGGGGCGTGTACGAAGGAAGCTTTGAGGGTGGTGTTGATAGCCTGGGTTTTGGTCCTCTTGTTCCGACGGAGAGTGAGAGATCTTTGATGGAGAGAGTGAGGCATGAACTTAAGCATGAACTGAAACAGGGTTACAAGGAGAAGATTGTTGACATCAGAGAAGAGATTCTCCGCAAGAGAAGAGCCGGAAAGCTCCCCGGTGACACCACTTCGCTTCTCAAAGCTTGGTGGCAATCTCATTCTAAATGGCCTTACCCTACTGAGGAAGACAAGGCAAGGCTGGTGCAGGAAACAGGATTGCAATTAAAGCAGATAAATAATTGGTTCATAAATCAAAGGAAAAGGAACTGGCATACTAACCCCTCTTCCTCTAGTAACTCTAAAACCAAGCGCAAGAGTGCAGGTGAGAGCAGTAACCAAAGCTTCATGTGA 1083 0.5162 MAFHEHHMQHEIAFQRFTEQELTTENRDMQQQRAGVVAPPPPTWLNNPRQQQNFLHQLQPQPPPPPETAEKSMDRNTSFESSDELREYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLHQSQRVVDKYSAIANPVVDDKELDHFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGEGTGATMSDDEDEQAESNGGGGVYEGSFEGGVDSLGFGPLVPTESERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSSNSKTKRKSAGESSNQSFM 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181279g00011 360 SMART HOX_1 275 340 IPR001356 GO:0003677
Stsc181279g00011 360 MobiDBLite consensus disorder prediction 192 222 - -
Stsc181279g00011 360 Pfam KNOX2 domain 142 192 IPR005541 GO:0003677|GO:0005634
Stsc181279g00011 360 SMART KNOX2_2 138 193 IPR005541 GO:0003677|GO:0005634
Stsc181279g00011 360 Pfam KNOX1 domain 88 129 IPR005540 GO:0003677|GO:0005634
Stsc181279g00011 360 Pfam ELK domain 253 274 IPR005539 GO:0003677
Stsc181279g00011 360 SUPERFAMILY Homeodomain-like 275 340 IPR009057 -
Stsc181279g00011 360 SMART KNOX1_2 86 130 IPR005540 GO:0003677|GO:0005634
Stsc181279g00011 360 MobiDBLite consensus disorder prediction 330 360 - -
Stsc181279g00011 360 ProSiteProfiles ELK domain profile. 253 273 IPR005539 GO:0003677
Stsc181279g00011 360 CDD homeodomain 276 337 IPR001356 GO:0003677
Stsc181279g00011 360 FunFam homeobox protein knotted-1-like 3 isoform X1 274 335 - -
Stsc181279g00011 360 SMART ELK_2 253 274 IPR005539 GO:0003677
Stsc181279g00011 360 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 87 346 - -
Stsc181279g00011 360 MobiDBLite consensus disorder prediction 28 81 - -
Stsc181279g00011 360 Gene3D - 279 356 - -
Stsc181279g00011 360 ProSiteProfiles 'Homeobox' domain profile. 273 336 IPR001356 GO:0003677
Stsc181279g00011 360 Pfam Homeobox KN domain 293 332 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181279g00011 Stsc-Chr181279 36988 40708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181279g00011 88 357 Homeobox Transcription Factor Family AT5G11060 81.455 8.91e-162 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Stsc181279g00011 KNOX2 1.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181279g00011 - - gmx:100781997 567.77