Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181279g00009 ATGGCGTTCGATCAAAATTCCGTAACAAAAGATCTGCGCCCGCTGAATGTAGTTACGACCTTGGCTATGGCGGAGGAGCAATTCGTTTCACCGTCGGCCACCGCCACCGCCACCACACCTCCCACCCCCAATTCAGGCCGCGAAATGGGAAGCCCCGGCACGCCGCAGGTGCCTCTTTTTTACTCACCTACCGTCTCTGATGGCGCCACCCTCGTTGGATTGAGCTATGGGAATGTGCCCTCCACGGCGGCCACCACGTGGTGCTTACGTCCTGCCATGTCCATTGCCCATTCCAATACCAACCCTCCCGTTGGGTTTAGTTATGGTCATAGTTGTTGTAATAGGGTTGCACCTGGCAATGCTGCTTTGAATTTGGGGAACTGGGTGGGGACTAATGGGGCATTGGATAAGGCTTATAATGACTCTGCTAATGGTTTTCCTGGTTACGGTGGTGTTAGGATTAACAGGGTCGTTGCTAATGCCACTGATCAGGCTAGTTATGGCCATACTACTAACCACCGCCCTGATCATGTTGGCGAGGATGGTGGCAGCGGCAGTGGCAGCGTTGATGAATCGGTTTCAGGGAGGAAAGTGAAGTTCATGTGCAGCTTTGGTGGAAGGATTCTGCCTAGGCCTAGTGATGGGATGCTGAGATATGTTGGAGGGAAGACTAGGATTATTAGTGTTAGGAGAGATGTGAGATTCAATGATTTGATGCAGAAGATGGTTGATACATATGGGCAGCCTGTGGTTATAAAGTATCAGCTCCCTGAGGAGGAGCTTGATGCACTCGTGTCAGTTTCGTGCCCCGATGATGTTGAGCATATGATGGAGGAGTATGAAAAATTGATGGAGAGGTCCCCTGATGGCTCTGCTAAATTGAGGGTTTTCCTTTTTTCTGCTGCTGATCTTGAAATCTCCAGCGGGATGCACTTCGCAGACCTGCAAGATAGCGGGCAGAGATATGTGGAGGCTGTGAATGGAATTGCAGATGAGATTAGTATTGGGATCACTAGGAAGGAGAGCGTTGCAAGTGCAGCATCAACTCAGAATTCTGATTTGAGTGGCTCGGAGACCCTTGATGGTTTAATTTCTGGTGATGTGAGTGCAGTGCCTAAGGGAAATGTAACAACTTCGGACACGCCTGCAAATTTGATGGCTTCTGAGGCAAGTGGTGCTGCTTCTCCAGTTTTGATGGGCATATCAGCTGCTAGGACTGGTCCAACCCACACACCATATTTTCATAATGAGGTCGACCTGGAGAGGTCTCCACCTGCTACCATGTCTCAACAGCCAGTTGGGTTGCAGCAAACCGGGACGGAAATTCCATATTCTTCACCTTATTTACAGCCCTTTTTTGATTTGCGCCAGGAAGTTATGAATTATACAGATTATGTCCAGATACCTCCGCGAACAGGGTTTCGAAATGCACAGTTTCTAGGGAAGACAGGGCAAGTCTTCACTCAACCTCAGTTTCATGATAATAATAATCCCAGTTCAGCATCTCATCAGCTCATTCCTGGAGTGCAAATGACGATTACTCAACAAGGCATGCCTTCTCATGTTGGCATGAGGTCGAATGTCATACAACCACAACAACTGATGCAACTGCAGCAAAATCGTTCAGAGCAGTATAATGATGAAAATACATCAGGGATGAGGATTCTCCAGCTTCCCACTGAGCATGGCTACAACACTTACCAGGTTCCAGTGAATCAAGTCCCTTCTGTCATAGTTGGAGGTAATTATGGCTGGGTTCAGGTTCCTTCACAAGATCAAGTTGTTTTGTCTGATGGGTTATTACCCCAACAGCAGGTAATGGTCCCTGAGAAAAGCCAAAGAGTGGAGGACTGTTCAATGTGCCAAACAAAATTGCCTCATGCACATTCAGATTCGGTGGTTCAAGATCAACGCATTAATGGTGCAGGCCCAGTCCCTGATTCAGTCCCAGCTTACCATAGTCTTCCCATGGAGGACAACTCAAAAGCTCAAGCCGCAAACAGTGTTATGTTGAGGGAAGGAATTGTTGAACAAGTGTCCCAGGCCAAACCACAGGTTATTAGAAAACCGGAGTCCCCAGATGGACTAACTTGTACTGAAAAAACTGCACTTCCTCAAAATCTTGAGCCACAACCTGAGGGAGTTAGGATTTTTACGCATAAGCTAGACGGTTCTGATTATCCTAGAAATTCAACTACCTTCGAAACCATTGGAAGGACAGGGGCTCAACAGTCTCCAACACTCTCTCCAATTGATGGGCTCATGGGCTCTTCACAATTATCTTATATCGATGATGTTGGCCACCGGCATATATGTCCAGTTGAAAACTCGGGTAAACAGGATGTGCTTGTGAATAAACCTGGCCATAACAATATATCTAATGTTGATGGGACAGCTATACAATCTTCAGAGTGCATGGCCCAAGGATCTCCCAAAGAATATTCTACTGATCTTTCTGGTGTTGTACCAAAGTCAGAGTTAGTGGATAGGATTACACAAGAACATCTGAAATCTATTGATGGAAGGGTGGACAGCCTCAATGTATGCATTCCTGAAGTCCGTGATCACTGCTTGCAGCCGGTTGATAAATCTAGCGGGATTACTAGGATCACAGGTATGCTGCCTTCCTCTACAGAAATTTTGTATGCCCGAAATTCCAGGACAGGGGAATACAATGAGGTTGCACAACACGCTGTTTGGGGCATTCCTGGTTTGAATCATCAGCCACAGATAGCAAACCACCACAAGGATGATGCACCATCATCAATATCACAATCTGTAAGGTTTGGAGATATTCAGGATTCTACAAACTCACTTTTCAGCAATCAAGATCCTTGGAATATACAGCATGGAAACTCTGGCGAACAAAATTTAGGAGCACAATTTGACGATGGCCTCTACCAATCTTTGAAACAGCATTTACCTTTAGAACATGTTCGATCTGCCAGAGGTTCAGCAGAAGATCAACAACTACAAGCTGTTGCTGAAGATTTTAAAGCAGAAACTCAGAGCATCAAGAGCAGGCAACTGGAAACAGCAAATTTTGGCTTTCCAGCATCAGATGTTGGAGGATTGCAGGTAATAAAGAACTGTGACCTTGAAGAGCTGACAGAGCTAGGATCTGGTACATTTGGGACTGTGTATCATGGAAAATGGAGAGGCACTGATGTTGCAATCAAGCGGATTACTGATAGGTGTTTCGCAGGAAAGCCTTCAGAGCAAGAGCGAATGGTCTGTATTTCATTGTTAAATGGAGGTTCTGTGGCAACAGTAACTGAATATATGGTTAATGGTTCTCTAAGAAATGCCTTGCTGAAGAATGGGAGGAACCTTGACAAGCGCAAGCGACTCTTGATTGCAATGGATGTGGCATTTGGTATGGAGTATCTGCATGGAAAAAACATAGTTCACTTTGACTTGAAAAGTGACAACTTGCTTGTGAATCTCCGAGATCCCCACCGCCCAATATGCAAGGTTGGTGACTTGGGCCTATCCAAAGTGAAGCGTCAGACACTGATCTCTGGCGGTGTGAGAGGAACTCTACCTTGGATGGCTCCGGAGCTGCTGAATGGGAGCAGTAGCCTTGTTTCAGAGAAGGTTGATGTTTTCTCATTTGGTATTGTCATGTGGGAACTCTTAACTGGTGAAGAGCCATATGCTGATTTGCACTATGGTGCCATTATAGGTGGTATTGTGAGCAACACTTTGCGCCCTCCAGTTCCGGAATCTTGTGATTCAAACTGGAGGTTGCTGATGGAGAATTGCTGGTCATCAGAGCCATCAGAGAGACCTAGCTTCACTGAGATTGCCAATGAATTGCGAGCCATGGCGACCAAGATCACTGCCAAGGGTCAAAATCAGCAGCAGCAGCAGCAGCAACAACAACAACCTTCTTCCTCGCAGAGCCAAGTGCAGAAATGA 3921 0.4639 MAFDQNSVTKDLRPLNVVTTLAMAEEQFVSPSATATATTPPTPNSGREMGSPGTPQVPLFYSPTVSDGATLVGLSYGNVPSTAATTWCLRPAMSIAHSNTNPPVGFSYGHSCCNRVAPGNAALNLGNWVGTNGALDKAYNDSANGFPGYGGVRINRVVANATDQASYGHTTNHRPDHVGEDGGSGSGSVDESVSGRKVKFMCSFGGRILPRPSDGMLRYVGGKTRIISVRRDVRFNDLMQKMVDTYGQPVVIKYQLPEEELDALVSVSCPDDVEHMMEEYEKLMERSPDGSAKLRVFLFSAADLEISSGMHFADLQDSGQRYVEAVNGIADEISIGITRKESVASAASTQNSDLSGSETLDGLISGDVSAVPKGNVTTSDTPANLMASEASGAASPVLMGISAARTGPTHTPYFHNEVDLERSPPATMSQQPVGLQQTGTEIPYSSPYLQPFFDLRQEVMNYTDYVQIPPRTGFRNAQFLGKTGQVFTQPQFHDNNNPSSASHQLIPGVQMTITQQGMPSHVGMRSNVIQPQQLMQLQQNRSEQYNDENTSGMRILQLPTEHGYNTYQVPVNQVPSVIVGGNYGWVQVPSQDQVVLSDGLLPQQQVMVPEKSQRVEDCSMCQTKLPHAHSDSVVQDQRINGAGPVPDSVPAYHSLPMEDNSKAQAANSVMLREGIVEQVSQAKPQVIRKPESPDGLTCTEKTALPQNLEPQPEGVRIFTHKLDGSDYPRNSTTFETIGRTGAQQSPTLSPIDGLMGSSQLSYIDDVGHRHICPVENSGKQDVLVNKPGHNNISNVDGTAIQSSECMAQGSPKEYSTDLSGVVPKSELVDRITQEHLKSIDGRVDSLNVCIPEVRDHCLQPVDKSSGITRITGMLPSSTEILYARNSRTGEYNEVAQHAVWGIPGLNHQPQIANHHKDDAPSSISQSVRFGDIQDSTNSLFSNQDPWNIQHGNSGEQNLGAQFDDGLYQSLKQHLPLEHVRSARGSAEDQQLQAVAEDFKAETQSIKSRQLETANFGFPASDVGGLQVIKNCDLEELTELGSGTFGTVYHGKWRGTDVAIKRITDRCFAGKPSEQERMVCISLLNGGSVATVTEYMVNGSLRNALLKNGRNLDKRKRLLIAMDVAFGMEYLHGKNIVHFDLKSDNLLVNLRDPHRPICKVGDLGLSKVKRQTLISGGVRGTLPWMAPELLNGSSSLVSEKVDVFSFGIVMWELLTGEEPYADLHYGAIIGGIVSNTLRPPVPESCDSNWRLLMENCWSSEPSERPSFTEIANELRAMATKITAKGQNQQQQQQQQQQPSSSQSQVQK 1306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181279g00009 1306 CDD PB1_UP2 201 299 - -
Stsc181279g00009 1306 ProSitePatterns Protein kinases ATP-binding region signature. 1039 1070 IPR017441 GO:0005524
Stsc181279g00009 1306 MobiDBLite consensus disorder prediction 1280 1306 - -
Stsc181279g00009 1306 Gene3D - 218 301 - -
Stsc181279g00009 1306 Pfam Protein tyrosine and serine/threonine kinase 1036 1273 IPR001245 GO:0004672|GO:0006468
Stsc181279g00009 1306 MobiDBLite consensus disorder prediction 166 192 - -
Stsc181279g00009 1306 MobiDBLite consensus disorder prediction 29 52 - -
Stsc181279g00009 1306 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1098 1290 - -
Stsc181279g00009 1306 SUPERFAMILY CAD & PB1 domains 213 304 - -
Stsc181279g00009 1306 ProSiteProfiles Protein kinase domain profile. 1033 1276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181279g00009 1306 SMART serkin_6 1033 1281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181279g00009 1306 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 217 301 - -
Stsc181279g00009 1306 SMART PB1_new 212 301 IPR000270 GO:0005515
Stsc181279g00009 1306 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1135 1147 IPR008271 GO:0004672|GO:0006468
Stsc181279g00009 1306 Gene3D Transferase(Phosphotransferase) domain 1 1096 1306 - -
Stsc181279g00009 1306 PRINTS Tyrosine kinase catalytic domain signature 1200 1222 IPR001245 GO:0004672|GO:0006468
Stsc181279g00009 1306 PRINTS Tyrosine kinase catalytic domain signature 1129 1147 IPR001245 GO:0004672|GO:0006468
Stsc181279g00009 1306 PRINTS Tyrosine kinase catalytic domain signature 1244 1266 IPR001245 GO:0004672|GO:0006468
Stsc181279g00009 1306 PRINTS Tyrosine kinase catalytic domain signature 1092 1105 IPR001245 GO:0004672|GO:0006468
Stsc181279g00009 1306 CDD STKc_MAP3K-like 1039 1273 - -
Stsc181279g00009 1306 SUPERFAMILY Protein kinase-like (PK-like) 1027 1272 IPR011009 -
Stsc181279g00009 1306 Gene3D Phosphorylase Kinase; domain 1 1019 1093 - -
Stsc181279g00009 1306 MobiDBLite consensus disorder prediction 1277 1306 - -
Stsc181279g00009 1306 Pfam PB1 domain 217 300 IPR000270 GO:0005515
Stsc181279g00009 1306 PANTHER SERINE-THREONINE PROTEIN KINASE 250 1276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181279g00009 Stsc-Chr181279 28503 34165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181279g00009 196 654 MAP Kinase Kinase Kinase AT3G46920 39.446 1.13e-78 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Stsc181279g00009 PK_Tyr_Ser-Thr 4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181279g00009 - - adu:107458739 2252.25