Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181279g00004 ATGGGCTACCCAATTATGGGGGAGACGCTCGAGTTCTTGTCCACCGGGTGGAAAGGACACCCGGAGAAGTTTGTGTTTGACCGCACCGTGAAGTATTCGTCGGAATTTTTCAAGACATCGCTGTTAGGGGAACCAACGGTTGTGTTGGGTGGAGCCGCCGGTAACAAGTTTTTGTTCTCCAATGAGAACAACCTGGTGAGGCTGTGGATGCCTGACAATCTGCACAAGTTGTTTCCGTCGTCGTTTCATCAGACAGGTTCGTCTAACGGAGAAGCTGCGAAGAAGGTGAGAATCATGCTTCCTCAGTTCATAAAGCCTCAAGCACTCCAACGTTACGTTTCCATCGTCCACTCCATTGCACAAACCCACTTTTCTTCCCTTTGGGAACACCATGTTCAAGTCGCTGTCTACCCTTTAGTGAAGAGGTACACGTTGTTGTTGGCATATCGATTGTTCGTAAGCATTGAGGATGAGAAGCACGTAACAAAGCTGGCAAAGCATTTCAAGCATATGGGGTCAGGGCTGATATCGTTGCCGATTGATTTTCCCGGAACTAACTTCAACAAAGCAATCAGAGCATGCAAATCAATAAGGAAAGAGCTTATAGAGATCATAAGGCAGAGGAAGGTGGATCTAAGTGAAGGGAATGTGTCCCCATCACAAGACATATTGTCTCACATGTTGTTCACATCCAGCAATGATAATAAAAATACGAGTAATGATGAATTGTTAATTGCTGATCAGATACTTGGACTCTTGTTCGGAAGCTATGACACTGTTAGTTCTACATGCACGTTAATTATCAAATACCTTGCAGACTTCCCTCACATATATGATAGAGTCTATCAAGAGCAAATGGAAATAGGGAAATCAAAAAGCGAAGGAGATTTGTTGAATTGGAATGACATCAACAAGATGAGATACTCTTGGAACGTAGCTTGTGAAGCTATGAGAATGACTCCTATAGCTCCTGGAGGTTTCAGGGAAGCCATCAATGACTTTACTTTCAATGGCTTCTCAATTCCTAAAGGGTGGAAGTTGTTTTGGAGTGCAAATTCAACACATAAGAGTGAAAAGTATTTTCCGGAGGCAGAGAAATTTGATCCAAGTAGATTTGAAGGAGATGGACCAGCACCCTTCACATTTGTGCCATTTGGTGGAGGACCAAGAATGTGCCCAGGAAACGAGTATGCACGCCTAGTAATCATGGTCTTCCTCCACAATTTGGTCAAGCGATTCAAATGGCAAATGTTGATTCCTCATGAGAAATTTGTCAGTGATCCATTCCCCATCCCTACACACAACCTCCCAGTTCGCCTTTATCCTCATAAACCCTAG 1338 0.4387 MGYPIMGETLEFLSTGWKGHPEKFVFDRTVKYSSEFFKTSLLGEPTVVLGGAAGNKFLFSNENNLVRLWMPDNLHKLFPSSFHQTGSSNGEAAKKVRIMLPQFIKPQALQRYVSIVHSIAQTHFSSLWEHHVQVAVYPLVKRYTLLLAYRLFVSIEDEKHVTKLAKHFKHMGSGLISLPIDFPGTNFNKAIRACKSIRKELIEIIRQRKVDLSEGNVSPSQDILSHMLFTSSNDNKNTSNDELLIADQILGLLFGSYDTVSSTCTLIIKYLADFPHIYDRVYQEQMEIGKSKSEGDLLNWNDINKMRYSWNVACEAMRMTPIAPGGFREAINDFTFNGFSIPKGWKLFWSANSTHKSEKYFPEAEKFDPSRFEGDGPAPFTFVPFGGGPRMCPGNEYARLVIMVFLHNLVKRFKWQMLIPHEKFVSDPFPIPTHNLPVRLYPHKP 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181279g00004 445 FunFam Taxadiene 5-alpha hydroxylase 1 443 - -
Stsc181279g00004 445 Pfam Cytochrome P450 3 417 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181279g00004 445 PRINTS P450 superfamily signature 311 322 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181279g00004 445 PRINTS P450 superfamily signature 383 392 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181279g00004 445 PRINTS P450 superfamily signature 392 403 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181279g00004 445 PRINTS P450 superfamily signature 255 272 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181279g00004 445 Gene3D Cytochrome P450 1 442 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181279g00004 445 PANTHER CYTOCHROME P450 26 1 429 - -
Stsc181279g00004 445 PRINTS E-class P450 group I signature 244 261 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181279g00004 445 PRINTS E-class P450 group I signature 392 415 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181279g00004 445 PRINTS E-class P450 group I signature 382 392 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181279g00004 445 PRINTS E-class P450 group I signature 350 374 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181279g00004 445 SUPERFAMILY Cytochrome P450 2 442 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181279g00004 445 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 385 394 IPR017972 GO:0005506|GO:0016705
Stsc181279g00004 445 CDD CYP90-like 28 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181279g00004 Stsc-Chr181279 7774 9656 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181279g00004 2 347 Cytochrome P450 AT5G36110 51.862 5.76e-119 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181279g00004 K20667 - gmx:100801007 638.262