Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181278g00025 ATGGAACAACTGGAACTTGCTTCTTCAGGTTCTCCTTTGGAAAAGGGACAAACAACTTCATCTTCTAAGATAATGGATCAACAATCAAACAAAATGGAGAGCGTTTCCTTCTTTGGCTTGTTTTCTGCAGCTGATTCAGTTGACTATGTGTTAATGTTCCTAGGAAGTGTTGGTGCTTGTGTCCATGGTGCTTCTCTCCCTCTTTTCTTTGTTTTGTTTGGTCGCATGATTGATTCTTTGGGACATCTTCATAGGGATCCTCACAAATTGTCATCACGGATTTCTGAGCATGCTTTGTACTTGGTCTATCTTGGACTTGTTGTTCTCGTATCAGCTTGGATGGGTGTTGCATTCTGGATGCAAACCGGCGAGAGGCAAACTGCGCGGTTGCGCTTAAAGTACTTAAGGTCAGTGCTAAGGAAGGACATTAATTTCTTTGACAATGAAGCCAGAGATGCTAATATCATTTTCCATATCTCGAGTGATGCAATTTTGGTACAAGATGCAATAGGCGACAAGACAGGCCATGCCATACGTTACCTATCCCAATTCATTGTTGGATTTGCCATTGGATTCACATCAGTGTGGCAGCTCACACTACTCACCTTGGCTGTTGTTCCATTGATAGCTATAGCAGGAGGAGCTTATACAATTATTATGTCTACTCTTTCAGAAAAGGGTGAAGCAGCTTATGCTGAAGCTGGCAAGGTGGCAGAAGAGGTAATATCTCAAGTGCGCACGGTTTACTCATTTGTAGGAGAAGAGAAAGCAGTAGGCGCATACTCTAAGTCACTTGATAAAGCTCTTAAGATGGGGAAGAAGAGTGGTTTTGCAAAAGGAGTTGGTGTTGGTTTTACATATGGCCTATTGTTTTGTGCTTGGGCATTGCTTCTATGGTATTCTAGCATACTTGTGAGGCATCACAAGACAAATGGAGGGAAAGCATTTACAACTATCATCAATGTCATCTTTAGTGGATTTGCACTTGGCCAAGCTGCTCCAAGCCTTGGTTCCATTGCTAAAGGGCGTGCGGCTGCAGTGAATATCATGAACATGATTGCATCTGCGTCCGACGCAGAAAAAAAGTTGGATGATGGTACCGTTTTGCAACAAGTGGAAGGGAAAATTGAATTCTCTGAGGTCTGCTTTGCTTACCCTTCAAGGTCCAATATGGTCTTTGAAAATTTGAGCTTGGTAGTCAGTGCTGGGAAGACTATAGCAGTTGTTGGTCCTAGTGGTTCAGGAAAGAGCACAATCATTTCCATGATTCAACGGTTTTATGAACCTACTTCAGGTAAGATCCTGTTGGATGGATGTGACTTAAAGAATCTTCAATTGAAATGGTTGAGAGAACAGATGGGATTGGTAAGTCAAGAACCAGCACTATTTGCCACAACAATAGCTGGCAACATTTTATTTGGAAAGGAAGGTGCTGATATGGATCAAATCATACAAGCTGCCAAGGCTGCAAATGCTCATTCCTTCATTGAAAGATTACCAGATGGTTATAATACTCAGGTTGGAGAAGGTGGCACCCAACTTTCAGGAGGACAGAAACAGAGAATTGCTATAGCTAGAGCAGTTCTCAGAAACCCAAAAATATTGCTTTTAGATGAAGCCACAAGTGCTCTTGATGCTGAATCAGAACTCATAGTGCAGCAAGCATTGGAAAAAATAATGTCAAACCGGACCACAATAATTGTTGCACATAGATTATCTACCATACGAGATGTAGATACCATTATTGTATTGAAGAATGGTCAAGTTGCTGAGAGTGGTACTCATTCGGAACTGATGTTGAAAAATGGGGATTATGTGAATCTGGTGAGCTTGCAGGAATCACAGAATGTCACACGCTCTAGCTCAATATCACGCTCTGGAAGTTCAAAGCACTTTAGCTTCAGAGAAAATTCTGACAATCAGAACTATCAAGATCTCAATGCAGAAAGAGAGCTTCAAACAAGTGATCAAGGCATGCCTTTGAACGCTGCTTCTGTTCCGTCGATTTTGGACTTACTGAGACTGAATGCTCCAGAGTGGCCTTACACAGCACTTGGTTCAATTGGTGCAATTCTGGCTGGAATGGAGGCTCCTCTCTTTGCCCTTGGAATCACACATATTTTGACTGCATTTTACTCTGGTTCTAAAATCAAGCAAGAAGTTGATCGGATAGCGATGGCATTTGTTGGATTGGCTGTAATAACTATACCTATTTACCTGTTGCAACATTACTTTTATACTCTCATGGGAGAGCGCCTCACTGCCCGTGTGCGTTTATTGATGTTCTCAGCTATCCTTACAAATGAGATCGCCTGGTTTGACTTGGATGAGAACAACACTGGCTCAATAACGGCCATGCTAGCTGCAGATGCAACCTTAGTAAGAAGTGCTCTAGCTGACAGAATATCTACCATTGTGCAAAATGTAGCTCTCACTGCAACAGCATTTGCCATTGCCTTCACACTCAGTTGGAAACTCACTTGTGTGGTTGTTGCATGCCTTCCCCTTCTCATAGGGGCTTCTATCACAGAGCAACTGTTTCTCAAGGGATTTGGAGGAGACTATGGCCATGCTTACTCTAGAGCAATTTCTTTGGCAAGGGAAGCTATTGCTAACATACGTACGGTTGCTGCTTTTGGCGCAGAAGATCGTGTCTCAATTCAGTTTGCCTCTGAGTTGAACAAGCCCAACAAGCAAGCACTTTTAAGAGGCCACATATCAGGTTTTGGCTATGGTGTAACACAGCTGTTTGCTTTCTGTTCCTATGCCCTTGGACTTTGGTATGCATCAGTTTTAATCAAGCAGAAGGACTCAAATTTCGGAGATGTCATGAAATCCTTCATGATCTTGATCATCACTGCTCTGGCAATAGCAGAAACACTAGCTCTTACACCAGACATCGTGAAGGGATCTCAAGCACTAGGATCAGTTTTCAGCATTCTCCAGAGGAAAACAGCAATCAACCCCGACAACCCAAACTCAAAGATGGTAACTGATATCAAAGGAGACATAGAGTTTAGAAATGTGTGCTTCAACTATCCAATGAGACCTGATGTCCCCATATTTCAGAACTTAAACCTCAAAGTCTCTGCAGGGAAGAGTCTTGCAGTAGTAGGACAAAGTGGTTCAGGGAAGAGTACTGTGATTTCTCTGGTAATGAGATTTTATGACCCCATTTCTGGGTCTGTTCTAATCGATGAATGCGATATCAGAAGCCTAAACTTGAGATCCTTAAGACTGAGAATAGGATTGGTTCAGCAAGAGCCAGCTTTGTTTTCGACTACACTTTATGAAAACATCAAGTATGGAAGTGAGGAAGCATCAGAGATAGAGGTGATGAAAGCAGCAAGAGCAGCTAATGCTCATGAATTCATTAGCAGAATGCCAGAAGGGTACAGAACTCAAGTTGGTGAAAGAGGGGTGCAGTTATCTGGAGGACAGAAACAAAGGGTTGCTATTGCTAGAGCTATTCTGAAGGATCCATCCATACTTCTATTGGATGAAGCGACAAGCGCACTCGACACGGTGTCAGAGAGGCTTGTCCAAGAGGCACTGGATAAACTTATGGAAGGAAGAACTACAATTTTGGTAGCTCACAGGTTGTCAACTGTTAGAGATGCAAACAACATTGCAGTGCTGCAAAATGGGAGGGTTGCTGAAATGGGGAGCCATCAGAGGTTGATTTCAAAACCCGGAAGCATCTACAAGCAATTGGTTAGTCTGCAACAAGAGAAGCATTAA 3741 0.4266 MEQLELASSGSPLEKGQTTSSSKIMDQQSNKMESVSFFGLFSAADSVDYVLMFLGSVGACVHGASLPLFFVLFGRMIDSLGHLHRDPHKLSSRISEHALYLVYLGLVVLVSAWMGVAFWMQTGERQTARLRLKYLRSVLRKDINFFDNEARDANIIFHISSDAILVQDAIGDKTGHAIRYLSQFIVGFAIGFTSVWQLTLLTLAVVPLIAIAGGAYTIIMSTLSEKGEAAYAEAGKVAEEVISQVRTVYSFVGEEKAVGAYSKSLDKALKMGKKSGFAKGVGVGFTYGLLFCAWALLLWYSSILVRHHKTNGGKAFTTIINVIFSGFALGQAAPSLGSIAKGRAAAVNIMNMIASASDAEKKLDDGTVLQQVEGKIEFSEVCFAYPSRSNMVFENLSLVVSAGKTIAVVGPSGSGKSTIISMIQRFYEPTSGKILLDGCDLKNLQLKWLREQMGLVSQEPALFATTIAGNILFGKEGADMDQIIQAAKAANAHSFIERLPDGYNTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQQALEKIMSNRTTIIVAHRLSTIRDVDTIIVLKNGQVAESGTHSELMLKNGDYVNLVSLQESQNVTRSSSISRSGSSKHFSFRENSDNQNYQDLNAERELQTSDQGMPLNAASVPSILDLLRLNAPEWPYTALGSIGAILAGMEAPLFALGITHILTAFYSGSKIKQEVDRIAMAFVGLAVITIPIYLLQHYFYTLMGERLTARVRLLMFSAILTNEIAWFDLDENNTGSITAMLAADATLVRSALADRISTIVQNVALTATAFAIAFTLSWKLTCVVVACLPLLIGASITEQLFLKGFGGDYGHAYSRAISLAREAIANIRTVAAFGAEDRVSIQFASELNKPNKQALLRGHISGFGYGVTQLFAFCSYALGLWYASVLIKQKDSNFGDVMKSFMILIITALAIAETLALTPDIVKGSQALGSVFSILQRKTAINPDNPNSKMVTDIKGDIEFRNVCFNYPMRPDVPIFQNLNLKVSAGKSLAVVGQSGSGKSTVISLVMRFYDPISGSVLIDECDIRSLNLRSLRLRIGLVQQEPALFSTTLYENIKYGSEEASEIEVMKAARAANAHEFISRMPEGYRTQVGERGVQLSGGQKQRVAIARAILKDPSILLLDEATSALDTVSERLVQEALDKLMEGRTTILVAHRLSTVRDANNIAVLQNGRVAEMGSHQRLISKPGSIYKQLVSLQQEKH 1246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181278g00025 1246 CDD ABC_6TM_Pgp_ABCB1_D2_like 673 987 - -
Stsc181278g00025 1246 Gene3D - 366 613 IPR027417 -
Stsc181278g00025 1246 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 993 1242 IPR027417 -
Stsc181278g00025 1246 Gene3D ABC transporter type 1, transmembrane domain 39 973 IPR036640 GO:0005524|GO:0016020
Stsc181278g00025 1246 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1004 1240 IPR003439 GO:0005524
Stsc181278g00025 1246 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 366 612 IPR027417 -
Stsc181278g00025 1246 SUPERFAMILY ABC transporter transmembrane region 48 346 IPR036640 GO:0005524|GO:0016020
Stsc181278g00025 1246 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 376 611 IPR003439 GO:0005524
Stsc181278g00025 1246 CDD ABC_MTABC3_MDL1_MDL2 376 612 - -
Stsc181278g00025 1246 Gene3D - 994 1246 IPR027417 -
Stsc181278g00025 1246 FunFam ABC transporter B family member 4 366 620 - -
Stsc181278g00025 1246 Pfam ABC transporter transmembrane region 687 955 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc181278g00025 1246 Pfam ABC transporter transmembrane region 53 325 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc181278g00025 1246 SUPERFAMILY ABC transporter transmembrane region 672 983 IPR036640 GO:0005524|GO:0016020
Stsc181278g00025 1246 CDD ABC_MTABC3_MDL1_MDL2 1004 1242 - -
Stsc181278g00025 1246 Pfam ABC transporter 1023 1171 IPR003439 GO:0005524
Stsc181278g00025 1246 PANTHER ABC TRANSPORTER B FAMILY 20 695 IPR039421 -
Stsc181278g00025 1246 CDD ABC_6TM_Pgp_ABCB1_D1_like 52 349 - -
Stsc181278g00025 1246 ProSitePatterns ABC transporters family signature. 1143 1157 IPR017871 GO:0005524|GO:0016887
Stsc181278g00025 1246 Pfam ABC transporter 394 542 IPR003439 GO:0005524
Stsc181278g00025 1246 ProSitePatterns ABC transporters family signature. 514 528 IPR017871 GO:0005524|GO:0016887
Stsc181278g00025 1246 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 684 969 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc181278g00025 1246 SMART AAA_5 1031 1217 IPR003593 GO:0016887
Stsc181278g00025 1246 SMART AAA_5 402 588 IPR003593 GO:0016887
Stsc181278g00025 1246 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 53 341 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc181278g00025 1246 MobiDBLite consensus disorder prediction 1 25 - -
Stsc181278g00025 1246 FunFam ABC transporter B family member 4 994 1246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181278g00025 Stsc-Chr181278 113904 118757 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181278g00025 24 1246 Calmodulin-binding Proteins AT2G36910 49.522 0.0 1214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181278g00025 K05658 - gmx:100787093 2022.28