Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181278g00015 ATGTGTATATTGATTATTGAATATTGTATCAGCAGTTGTTGTAGCTGTTCCATCATCATCATCATCATGGCTGAGAGCACACCCAATCACACACAAACTGTTTCTGGATGGGCTGCTCATGATTCTTCTGGCATCATCACCCCCTACACTTTTAAAAGAAGGGAGAACGGTGTGAATGATGTGACCATAGAGATCTTGTACTGTGGGATTTGCCACACTGACATTCACTACGTAAAAAATGAATGGGGCATCACAAGGTACCCTGTTGTTCCAGGCCACGAGATCGTTGGGCTGGTAACCAAGGTGGGCACTCAAGTCAAGGGCTTCAAACAAGGAGACAGAGTTGGAGTCGGCTGCTTGGCTGCAACTTGTTTGGAATGTGAACATTGCAAAACCAATCAGGAAAACTACTGTGACAACCTTCAGTTTACTTACAATGGAGTTTTCTGGGATGGCAGCATCACCTATGGTGGATACTCCAAAATGTTGGTCGCAGATTACAGATACGTGGTACATGTTCCGGAGACTCTGGCAATGGACGCAGCGGCACCACTGCTGTGTGCTGGGGTGACGGTGTTCACTCCCCTGAAGGACCACGGTTTGGTTGAGTCGCAAGGGAAAAGCATTGGCATTGTTGGCTTGGGTGGTCTTGGACACGTGGCTGTCAAGTTTGCAAAGGCCTTCGGCCACCATGTCACTGTTATAAGCTCTTCTCCATCCAAAGAAGCTGAGGCTAAGGACCGTTTGGGAGCCGATGATTTCATTGTGAGCTCCAACCCAAAGCAGATGCAGGCTGCAAAGAGAAGCATGGATTTCATTTTGGACACAGTTTCAGCTGAGCACTCTCTGTTGCCCATATTGGAACTTCTGAAAGTGAATGGGACTCTGTTTATTGTGGGTGCACCCGACAAGCCATTTCAATTGCCCGCATTCCCTTTGATATTTGGTAAGAGATCGGTGAAAGGTGGGATCATTGGAGGAATTAAAGAAACCCAGGAAATGCTTGATGTTTGTGGGAAGCACAACATCACCTGTGACATTGAGTTAGTCACTCCAGATAGAATCAACGAAGCTCTTCAACGCCTTGCTAGCAATGATGTCCGTTACCGTTTCGTCATTGACATTGCTGCTGCTCCTACCTCTAATTAA 1149 0.4674 MCILIIEYCISSCCSCSIIIIIMAESTPNHTQTVSGWAAHDSSGIITPYTFKRRENGVNDVTIEILYCGICHTDIHYVKNEWGITRYPVVPGHEIVGLVTKVGTQVKGFKQGDRVGVGCLAATCLECEHCKTNQENYCDNLQFTYNGVFWDGSITYGGYSKMLVADYRYVVHVPETLAMDAAAPLLCAGVTVFTPLKDHGLVESQGKSIGIVGLGGLGHVAVKFAKAFGHHVTVISSSPSKEAEAKDRLGADDFIVSSNPKQMQAAKRSMDFILDTVSAEHSLLPILELLKVNGTLFIVGAPDKPFQLPAFPLIFGKRSVKGGIIGGIKETQEMLDVCGKHNITCDIELVTPDRINEALQRLASNDVRYRFVIDIAAAPTSN 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181278g00015 382 Gene3D - 188 345 - -
Stsc181278g00015 382 FunFam Cinnamyl alcohol dehydrogenase 188 345 - -
Stsc181278g00015 382 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 179 343 IPR036291 -
Stsc181278g00015 382 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 92 106 IPR002328 GO:0008270|GO:0016491
Stsc181278g00015 382 FunFam probable cinnamyl alcohol dehydrogenase 37 194 - -
Stsc181278g00015 382 Pfam Zinc-binding dehydrogenase 216 337 IPR013149 -
Stsc181278g00015 382 Gene3D - 37 375 - -
Stsc181278g00015 382 CDD CAD1 36 374 IPR047109 GO:0016616
Stsc181278g00015 382 SMART PKS_ER_names_mod 38 373 IPR020843 GO:0016491
Stsc181278g00015 382 Pfam Alcohol dehydrogenase GroES-like domain 59 172 IPR013154 -
Stsc181278g00015 382 PANTHER ALDEHYDE REDUCTASE 29 376 IPR047109 GO:0016616
Stsc181278g00015 382 SUPERFAMILY GroES-like 40 203 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181278g00015 Stsc-Chr181278 57057 58540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181278g00015 36 376 Monolignol Biosynthesis Gene Families AT2G21730 57.018 2.62e-144 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181278g00015 K00083 - gmx:100820588 641.343