Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181278g00012 ATGGCCAAATTGGTTCTTGTTTTGTGCAGCTTGATTGGGTTATTATGCAGCTTGAGAGTGTATGGTTTCTCAGCTTCTGGTTGGACCAAGGGCCATGCTACGTTCTATGGTGGTAGTGATGCCTCAGGAACTATGGGAGGAGCATGTGGGTATGGGAATCTGTATAGCACAGGGTATGGGACGAGAACAGCTGCTTTGAGCACAGCCTTGTTCAACGATGGAGCCTCATGTGGAGAATGCTACAAGATCATATGCGATTACAATGCAGACTCAAGATGGTGCATCAAAGGAAGATCAGTCACCATAACCGCCACAAACTTTTGCCCTCCTAACTTTGCTCTCCCCAATGACAATGGAGGGTGGTGCAACCCACCTCTCAAGCACTTCGATATGGCTCAGCCAGCATGGGAAAAGATTGGTATCTACAGAGGAGGCATCGTCCCCGTCTTGTTCCAAAGGGTGCCATGCAAGAAGCATGGAGGGGTGAGATTCACCATAAATGGGAGAGACTACTTTGAGTTAGTGCTGATAAGCAATGTGGGAGGAGCTGGATCAATCCAATCAGTGTCCATAAAGGGATCAAAAACAGGGTGGATGGCTATGTCAAGAAACTGGGGTGCTAACTGGCAATCCAATTCATATTTGAATGGCCAATCTTTGTCATTCAAAGTCACTACCACTGATGGAGAAACGAGGATTTTCAATAACATTGTTCCATCTAACTGGGGATTTGGCCAAACTTTCTCTAGCCCTCTTCAGTTCTCATAA 768 0.4635 MAKLVLVLCSLIGLLCSLRVYGFSASGWTKGHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCGECYKIICDYNADSRWCIKGRSVTITATNFCPPNFALPNDNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFTINGRDYFELVLISNVGGAGSIQSVSIKGSKTGWMAMSRNWGANWQSNSYLNGQSLSFKVTTTDGETRIFNNIVPSNWGFGQTFSSPLQFS 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181278g00012 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 161 IPR007112 -
Stsc181278g00012 255 SMART dpbb_1 63 151 IPR007112 -
Stsc181278g00012 255 PRINTS Expansin/Lol pI family signature 144 160 IPR007118 GO:0005576
Stsc181278g00012 255 PRINTS Expansin/Lol pI family signature 236 250 IPR007118 GO:0005576
Stsc181278g00012 255 PRINTS Expansin/Lol pI family signature 198 212 IPR007118 GO:0005576
Stsc181278g00012 255 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Stsc181278g00012 255 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Stsc181278g00012 255 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Stsc181278g00012 255 CDD DPBB_EXPA_N 27 156 - -
Stsc181278g00012 255 FunFam Expansin 18 157 - -
Stsc181278g00012 255 PRINTS Expansin signature 236 252 IPR002963 GO:0009664
Stsc181278g00012 255 PRINTS Expansin signature 136 149 IPR002963 GO:0009664
Stsc181278g00012 255 PRINTS Expansin signature 119 136 IPR002963 GO:0009664
Stsc181278g00012 255 PRINTS Expansin signature 172 193 IPR002963 GO:0009664
Stsc181278g00012 255 PRINTS Expansin signature 58 72 IPR002963 GO:0009664
Stsc181278g00012 255 PRINTS Expansin signature 87 98 IPR002963 GO:0009664
Stsc181278g00012 255 PRINTS Expansin signature 100 110 IPR002963 GO:0009664
Stsc181278g00012 255 PRINTS Expansin signature 160 172 IPR002963 GO:0009664
Stsc181278g00012 255 PRINTS Expansin signature 207 228 IPR002963 GO:0009664
Stsc181278g00012 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 171 250 IPR007117 -
Stsc181278g00012 255 Pfam Lytic transglycolase 63 150 IPR009009 -
Stsc181278g00012 255 Pfam Expansin C-terminal domain 162 239 IPR007117 -
Stsc181278g00012 255 SUPERFAMILY Barwin-like endoglucanases 27 179 IPR036908 -
Stsc181278g00012 255 SUPERFAMILY PHL pollen allergen 158 250 IPR036749 -
Stsc181278g00012 255 PANTHER EXPANSIN-A15 6 250 IPR002963 GO:0009664
Stsc181278g00012 255 Gene3D - 17 157 IPR036908 -
Stsc181278g00012 255 Gene3D - 161 255 IPR036749 -
Stsc181278g00012 255 FunFam Expansin 161 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181278g00012 Stsc-Chr181278 46103 47217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181278g00012 63 254 Expansin Gene Family AT1G20190 83.333 6.60e-122 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181278g00012 - - gmx:548040 477.248