Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181278g00007 ATGTGGTACTGCTGCAGTGGTAAGGCACGTGAAATTCCGATTATGACAGGGTCGGATTCGAGTCCAAAGCAGCAGAGGCAGCAGAAAGAAGAGAGGGCGGGGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGATAGGAGGAATAGGAGTGGTCCTGGGGAGGCCATACGTGGACATAAATAGTATGTACGAGATGAAGAAGGAGCTTGGAAGAGGGCAGTCAGGGGTGACATACCTGTGCATAGAGAGATCGACGGGGAGGGAATACGCATGCAAGTGTATATCTCGAGGGAAGCTGGTGAGGATGGATGAGATAGAAGACGTGAGGAGGGAGATAATGATACTGCAGCACTTGTCAGGGCAGCCCAACATTGTTGAGTTCCGTGGGGCCTACGAGGACAGGCAGAATGTTCACCTTGTCATGGAGCTCTGCAGCGGAGGGGAGCTCTTTGACAGGATAATAGAAAAGGGCACTTACTCCGAGAGAGAGGCTGCCCGCTTGATGAGGCAGATTGTCAACGTTGTCCATGTTTGCCACTTCATGGGAGTCATGCACAGAGACCTTAAGCCTGAGAACTTCTTGCTTGCCACCAAGGATCCCCATGCTCCCCTTAAAGCTACTGATTTTGGTCTCTCCATTTTCATTGAACAAGATAAAGTGTACAAGGATATAGTTGGGAGTGCATACTATGTGGCTCCGGAGGTGCTGAAACGCAACTATGGAAAGGAGATAGATGTATGGAGTGCTGGAGTCATTCTATACATTCTCTTGAGTGGGGTGCCCCCATTTTGGGGTGAAACCGAGAAGCAGATCTTTGATGCTATCTTGGAAGGCAAGTTAGATCTGGAAAGCGCACCATGGCCTTCTATTTCAGCTGCTGCAAAAGATTTGATCAGGAAAATGTTGGCTTATGAACCTAAGAAACGCATCACAGCTTCTGCTGCCCTAGAACACCCTTGGATGAAGGAAGGGGGGGAAGCATCTGACAAGCCTATAGACAATGCGGTTTTAAGTAGGATGAAACAATTCAGAGCAATGAACAAGATGAAAAAACTTGCTTTGAAGGTGATAGCTCAAAACCTTTCAGAGGAAGAAATCAAAGGCCTGAAACAAATGTTCAACAATATGGATACGGATCGCAGCGGCACAATTACATTTGAAGAACTGAAATCTGGTCTGTCCAGATTGGGATCCAAGCTTTCTGAAACTGAAATAAGGCAGCTAATGGATGCGGCTGATGTTGATAAGAGTGGAACCATTGACTATTATGAATTCATTACTGCTACCATGCATCGGCATAAACTTGAGAAGGAAGAGAATTTGTATAAGGCTTTTCAATATTTCGACAAGGATAACAGCGGGTCAGATGGGAGGATCAACTACGAGGAGTTCGTGTCTATGATGAGGAAGGGGACATTGGATAATGATGGGATTGCCGGCAAAGAAAGAACACGATAA 1461 0.4668 MWYCCSGKAREIPIMTGSDSSPKQQRQQKEERAGQRERERERERGIGGIGVVLGRPYVDINSMYEMKKELGRGQSGVTYLCIERSTGREYACKCISRGKLVRMDEIEDVRREIMILQHLSGQPNIVEFRGAYEDRQNVHLVMELCSGGELFDRIIEKGTYSEREAARLMRQIVNVVHVCHFMGVMHRDLKPENFLLATKDPHAPLKATDFGLSIFIEQDKVYKDIVGSAYYVAPEVLKRNYGKEIDVWSAGVILYILLSGVPPFWGETEKQIFDAILEGKLDLESAPWPSISAAAKDLIRKMLAYEPKKRITASAALEHPWMKEGGEASDKPIDNAVLSRMKQFRAMNKMKKLALKVIAQNLSEEEIKGLKQMFNNMDTDRSGTITFEELKSGLSRLGSKLSETEIRQLMDAADVDKSGTIDYYEFITATMHRHKLEKEENLYKAFQYFDKDNSGSDGRINYEEFVSMMRKGTLDNDGIAGKERTR 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181278g00007 486 ProSiteProfiles EF-hand calcium-binding domain profile. 437 475 IPR002048 GO:0005509
Stsc181278g00007 486 Gene3D Phosphorylase Kinase; domain 1 66 149 - -
Stsc181278g00007 486 FunFam calcium-dependent protein kinase 1 150 329 - -
Stsc181278g00007 486 MobiDBLite consensus disorder prediction 13 43 - -
Stsc181278g00007 486 ProSitePatterns Serine/Threonine protein kinases active-site signature. 184 196 IPR008271 GO:0004672|GO:0006468
Stsc181278g00007 486 FunFam calcium-dependent protein kinase SK5 359 431 - -
Stsc181278g00007 486 Pfam Protein kinase domain 64 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181278g00007 486 ProSitePatterns EF-hand calcium-binding domain. 414 426 IPR018247 -
Stsc181278g00007 486 MobiDBLite consensus disorder prediction 24 43 - -
Stsc181278g00007 486 ProSitePatterns Protein kinases ATP-binding region signature. 70 93 IPR017441 GO:0005524
Stsc181278g00007 486 SUPERFAMILY Protein kinase-like (PK-like) 64 329 IPR011009 -
Stsc181278g00007 486 SMART serkin_6 64 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181278g00007 486 Pfam EF-hand domain pair 370 430 IPR002048 GO:0005509
Stsc181278g00007 486 ProSiteProfiles EF-hand calcium-binding domain profile. 365 400 IPR002048 GO:0005509
Stsc181278g00007 486 ProSiteProfiles Protein kinase domain profile. 64 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181278g00007 486 FunFam Calcium-dependent protein kinase 1 66 149 - -
Stsc181278g00007 486 ProSitePatterns EF-hand calcium-binding domain. 378 390 IPR018247 -
Stsc181278g00007 486 SUPERFAMILY EF-hand 361 470 IPR011992 -
Stsc181278g00007 486 Gene3D Transferase(Phosphotransferase) domain 1 150 329 - -
Stsc181278g00007 486 ProSiteProfiles EF-hand calcium-binding domain profile. 401 436 IPR002048 GO:0005509
Stsc181278g00007 486 Gene3D - 330 477 - -
Stsc181278g00007 486 CDD STKc_CAMK 64 321 - -
Stsc181278g00007 486 CDD EFh 370 429 IPR002048 GO:0005509
Stsc181278g00007 486 PANTHER SERINE/THREONINE-PROTEIN KINASE 61 461 - -
Stsc181278g00007 486 SMART efh_1 405 433 IPR002048 GO:0005509
Stsc181278g00007 486 SMART efh_1 369 397 IPR002048 GO:0005509
Stsc181278g00007 486 SMART efh_1 441 472 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181278g00007 Stsc-Chr181278 19223 24779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181278g00007 52 473 EF-hand Containing Proteins AT3G20410 67.621 0.0 652
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Stsc181278g00007 Pkinase 1e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181278g00007 K13412 - gmx:100816157 722.62