Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181277g00021 ATGCAGGTGAGTGTTCCATGCAGCAGCATGTCAATGGTGGTGACAGTGAGATGTGGGCACTGCACAAGCCTCCTCTCTGTTAATATGATGAAAGCTTCTTTTGTCCCTTTACACCTCTTAGCTTCTCTTTCTTCTCATCATCATCATCATCATCACCAACTTGATCAGGTAAAAGAGAGTAGTAGTGCAGAAGAAGAGGATGCAAACAAGATCAGAATGAACAGTGGATCCAGTAGCATGATGATGATGAACTACTATTCTGATGATTGTGAAGAAGAGGATTTAACCAACACAATCAACAATGTTGTCAACAAACCCCCAGAGAAAAGACAGCGAACTCCATCAGCTTATAACCGATTCATCAAAGAAGAGATTAAAAGGCTAAAGGCAGAAAACCCTGACATGGCACACAAGGAGGCTTTCAGTACTGCTGCTAAAAAT 441 0.4172 MQVSVPCSSMSMVVTVRCGHCTSLLSVNMMKASFVPLHLLASLSSHHHHHHHQLDQVKESSSAEEEDANKIRMNSGSSSMMMMNYYSDDCEEEDLTNTINNVVNKPPEKRQRTPSAYNRFIKEEIKRLKAENPDMAHKEAFSTAAKN 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181277g00021 147 SUPERFAMILY HMG-box 97 144 IPR036910 -
Stsc181277g00021 147 CDD HMG-box_SF 112 146 - -
Stsc181277g00021 147 MobiDBLite consensus disorder prediction 54 71 - -
Stsc181277g00021 147 MobiDBLite consensus disorder prediction 48 74 - -
Stsc181277g00021 147 Pfam YABBY protein 2 147 IPR006780 GO:0007275
Stsc181277g00021 147 Gene3D High mobility group box domain 102 147 IPR036910 -
Stsc181277g00021 147 PANTHER PROTEIN YABBY 6-RELATED 2 147 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181277g00021 Stsc-Chr181277 200606 201260 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181277g00021 1 147 C2C2-YABBY Transcription Factor Family AT1G23420 59.184 3.54e-44 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Stsc181277g00021 YABBY 1.9e-48 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181277g00021 K25796 - gmx:100779415 163.696