Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181277g00010 ATGGAACATAGCAGTTTGGTTTCGTGGCTGTTAGGTTCACTTCTTCTGCTCATGATGATGGAGATTTCTGCTGCTGTTCTTTCTCCTTCTGGCATAAACTATGAAGTTCTAGCTTTGATGGCGGTAAAGAATGACTTGGATGATCCTCACAATGTCCTGGAGAATTGGGATAGTAATTCTGTTGATCCTTGCAGCTGGAGGATGATTACTTGTAACCTAGATGGCTCTGTTTCTGCATTGGGAATGCCTAGTCAGAACTTGTCTGAGGCAGTTACAATGATGCTTGATTGGTACAGGTTGCTTCAGAATAATGCAATTTCTGGTCAGATTCCTGCAGCAATTAGAAGCCTAGAAAAGCTTCAGACACTTGATCTCTCCAATAACGATTTCAGTGGCGAGATACCGAATTCTTTGGGAGGCCTCAAGAACCTGAATTATTTGAGATTGAATAATAACAGCCTTACAGGACCGTGCCCTCAGTCTTTAAGCAACATCGAAGGCTTAACCCTCGTGGACCTCTCCTACAATAATCTGAGTGGTTCCTTGCCAAGATTACCAGCAAGAACATTGAAGATTGTTGGAAATCCATTAATTTGTGGTCCGAAATCCAACAACTGCTCTATTTTACCTGAGCCACTTTCCTTCCCCCCAGATGCACTTAGAGGCCAATCAGATGGTAGTAAGGAAAACCATCATGTGGCTGTTGCTTTCGGAGCAAGTTTTGGTGCTGCCTTTGTCTTCGTGATAATTATAGTGTTCCTTGTTTGGTGGCGATATAGGCACAACAAGCAGATTTTCTTCGATGTTAACGAGCAATATGATCCAGAGGTGCGCCTTGGCCATTTAAAAAGGTACACATTCAAAGAGCTTCGAGCCGCAACAGACCACTTCAACTCGAAGAATATCCTAGGTAGAGGTGGATTTGGAATAGTTTACAAGGCGCGCTTGACTGATGGGACTGTGGTAGCTGTTAAAAGGTTGAAGGACTACAATGCAGCAGGTGGTGAGATCCAGTTTCAGACAGAAGTTGAGACAATAAGTTTAGCTGTCCACCGCAATCTTCTTAGACTCTGCGGGTTTTGCAGTACTCAGAATGAAAGGCTTCTTGTTTATCCGTATATGGCTAATGGCAGTGTTGCCTCTAGATTGAAAGATCACATTCATGGTCAGCCAGCTTTAGATTGGACAAGGCGGAAGAGAATAGCGCTAGGTACAGCGAGAGGGTTGGTCTATTTGCATGAGCAATGTGATCCTAAAATTATTCACCGTGACGTGAAAGCTGCCAACATATTGCTAGATGAAGACTTTGAAGCAGTTGTTGGTGATTTTGGTTTAGCTAAACTTCTGGACCATAGAGATTCCCATGTGACCACTGCCGTCCGAGGCACGGTTGGTCACATTGCTCCTGAGTATCTATCCACAGGTCAGTCATCAGAAAAGACCGATGTATTCGGGTTTGGAATCTTGCTGCTTGAGCTGATCACAGGTCATAAGGCTCTAGATTTCGGTCGAGCATCAAACCAGAAAGGCGTAATGCTTGATTGGGTTAAGAAGCTCCATCAGGATGGAAGACTAAATCAAATGGTTGACAAAGATCTAAAGGGAAACTTCGACCTTGTCGAATTAGAAGAAATGGTACAGGTTGCACTCTTGTGCACACAATTCAATCCTTCTCACCGTCCCAAGATGTCAGACGTATTGAAGATGTTGGAAGGAGACGGCTTAGCTGAGAGATGGGAGGCCTCACAGAGGATTGAGACTCCGAGGTTCAGGTCCTGCGAAAGCCACCCTCAAAGATATTCGGATTTTATAGAGGAATCTTCACTCATAGTAGAAGCTATGGAGCTTTCTGGACCTAGGTGA 1863 0.4423 MEHSSLVSWLLGSLLLLMMMEISAAVLSPSGINYEVLALMAVKNDLDDPHNVLENWDSNSVDPCSWRMITCNLDGSVSALGMPSQNLSEAVTMMLDWYRLLQNNAISGQIPAAIRSLEKLQTLDLSNNDFSGEIPNSLGGLKNLNYLRLNNNSLTGPCPQSLSNIEGLTLVDLSYNNLSGSLPRLPARTLKIVGNPLICGPKSNNCSILPEPLSFPPDALRGQSDGSKENHHVAVAFGASFGAAFVFVIIIVFLVWWRYRHNKQIFFDVNEQYDPEVRLGHLKRYTFKELRAATDHFNSKNILGRGGFGIVYKARLTDGTVVAVKRLKDYNAAGGEIQFQTEVETISLAVHRNLLRLCGFCSTQNERLLVYPYMANGSVASRLKDHIHGQPALDWTRRKRIALGTARGLVYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGHKALDFGRASNQKGVMLDWVKKLHQDGRLNQMVDKDLKGNFDLVELEEMVQVALLCTQFNPSHRPKMSDVLKMLEGDGLAERWEASQRIETPRFRSCESHPQRYSDFIEESSLIVEAMELSGPR 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181277g00010 620 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 10 581 - -
Stsc181277g00010 620 ProSitePatterns Protein kinases ATP-binding region signature. 303 325 IPR017441 GO:0005524
Stsc181277g00010 620 SUPERFAMILY L domain-like 33 196 - -
Stsc181277g00010 620 Gene3D Ribonuclease Inhibitor 32 207 IPR032675 -
Stsc181277g00010 620 FunFam Somatic embryogenesis receptor kinase 1 266 373 - -
Stsc181277g00010 620 Pfam Protein kinase domain 298 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181277g00010 620 Gene3D Phosphorylase Kinase; domain 1 266 373 - -
Stsc181277g00010 620 ProSiteProfiles Protein kinase domain profile. 297 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181277g00010 620 Gene3D Transferase(Phosphotransferase) domain 1 374 589 - -
Stsc181277g00010 620 FunFam Somatic embryogenesis receptor-like kinase 1 374 590 - -
Stsc181277g00010 620 FunFam Nuclear pore complex protein NUP107 32 184 - -
Stsc181277g00010 620 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Stsc181277g00010 620 SMART serkin_6 297 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181277g00010 620 SUPERFAMILY Protein kinase-like (PK-like) 274 571 IPR011009 -
Stsc181277g00010 620 ProSitePatterns Serine/Threonine protein kinases active-site signature. 420 432 IPR008271 GO:0004672|GO:0006468
Stsc181277g00010 620 Pfam Leucine rich repeat 101 154 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181277g00010 Stsc-Chr181277 70819 74347 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181277g00010 68 620 Receptor kinase-like Gene Family AT1G60800 73.944 0.0 792
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Stsc181277g00010 Pkinase 2.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181277g00010 - - gmx:100784164 1048.11