Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181277g00009 ATGAATTCTGGGAAGACTAGCTGGTGTTACAAGGGGTGTATTAAATGTCCAAAGAAGGTTGAACCTAAAGAGAACAATATGTGGGAGTGCACCAGGTGCAATAAGATTACTAGCGGCTATACATACAGGTACAAGGTTGAAATAGTTGCTTATGATGATACTGCCACTATTACACTTCTTTTATGGGATAATGAGGTAGCGGATTTGGTAGGTATAAAGGCCCAAACGCTGAAGGAGTCTATGGAGGGTGATAAGGAAGGTTACCCATCTGTCCTTGACGAACTGTTTGAGAAGCGGCTGCTTTTTAAAATTAAAGTACAATCGGAAAACATCAGTGGGGAGGATGCTGTCTTCCGTGTGATGAAGATCTGCGATGATGAAGATAACAAGTCTGAAAATAACCCTGATGATCATTTGGACCGTTCTGTCACAAGCACCAAGGGAAAGACACCAACAAGGTTAAGTGTTGATGTAGATGGCATTGTAACCAGAGGAAAGAAAATAGCTTATGATGAAGGGCAGTTATCAACTAATAAGTTTAGTAGGAAGATGCCTAAGAAGGCCAAGACACAAAATTTGGATGCAGATGAGTAG 594 0.4108 MNSGKTSWCYKGCIKCPKKVEPKENNMWECTRCNKITSGYTYRYKVEIVAYDDTATITLLLWDNEVADLVGIKAQTLKESMEGDKEGYPSVLDELFEKRLLFKIKVQSENISGEDAVFRVMKICDDEDNKSENNPDDHLDRSVTSTKGKTPTRLSVDVDGIVTRGKKIAYDEGQLSTNKFSRKMPKKAKTQNLDADE 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181277g00009 197 PANTHER OS03G0429900 PROTEIN 7 190 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Stsc181277g00009 197 MobiDBLite consensus disorder prediction 127 144 - -
Stsc181277g00009 197 MobiDBLite consensus disorder prediction 127 151 - -
Stsc181277g00009 197 Gene3D - 1 134 IPR012340 -
Stsc181277g00009 197 Pfam Replication factor-A C terminal domain 7 122 IPR013955 -
Stsc181277g00009 197 SUPERFAMILY Nucleic acid-binding proteins 6 125 IPR012340 -
Stsc181277g00009 197 CDD RPA1_DBD_C 5 134 IPR047192 -
Stsc181277g00009 197 MobiDBLite consensus disorder prediction 174 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181277g00009 Stsc-Chr181277 62668 63741 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181277g00009 7 117 Core DNA Replication Machinery Family AT5G45400 24.370 1.27e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181277g00009 - - ahf:112803244 146.747