Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181276g00011 ATGGCGAGTAGGCTGAAGGAAGATGAGAAGAACGAGCGGGTAATTCGCGGTCTTCTTAAGCTTGAACCTAATCGAAGATGCATTAACTGCAACAGCTTGGGACCACAATATGTCTGCACAAATTTCTGGACATTTGTTTGCACAAACTGTAGTGGAATACACCGGGAATTCACCCACAGGGTTAAATCAATTTCAATGGCTAAATTTACTTCCCAAGAAGTTAATGCTCTTCAAGCAGGGGGAAATCAGCGTGCAAAAGAAATTTATTTTAAAGAATGGGATGCACAACGTAATTCTTTCCCTGATAGCAGTAATGTTGATCGGCTCCGGGACTTTATTAAGCATGTTTATGTGGATAGAAGATTTACTGGAGAGAGGGCTAATGACAAACCACCAAGAGGAAAGGGTGACAATGATATGTATCAAGGAGGGTCTAGAAGCCCCCCGTATGAGGAAACATATGAACGTCGTTATAGTGACAGGTCTAGTTCAGGTGGAAGAAGTCCTGGATATGATCAAGAAAGTAGGCAATATGGTGACTATGGGAGAAGTCCTGGTCGTCCTCCAATAGTCAATGATTGGCGACGTGAAGATCGTAGAGTATCTGATGGGGATTATAAGGTAGAAAGTCAATCTCCTGATCGAGCCAGAGATGTTGGTTCTTCCAGTCCACCTGTGGTCCGGCCTGTTAGAGAGATATTGGGAGAAAATGTAGTACCTCTTCGGATAAGTGAACCACCCAAACCAAACAGTGGAAGAGCTGCAGATGGCTCTGCATTGACACAGAGAACCGCATCTTCCAGTAGCTTGGCGTCCAGCAATGGGAATCCAGTGGATGTTAAGCCTGAGATTACAAAGAGCCTTATTGATTTCGATGCTGATCCTGAACCTCCTGTTGCTCCAGCGATTTCTCCTGCCCAACAAACTACTGTTCCTCAACCTGTTATGCAGCCAGAAAATCCCAGGGCTGATAATTGGGCCTCTTTTGATGTTGCTCCTCAAGCTACAGAAAATTCAAATCCAAGCCCGGTGAATGTAAATCCACTTGAATCTGTGTTGTCCCAATTGTCAGTGCCAGCTTCTTTACCTGCTCATGTTTCTGGAGTTCAAGCTGGTCCATATGTTGCAACAGCCATTCCTGCGCTTGATGTGACAACACCTGCAAGTGTCGGCGGTTTCTCAGCTTTCCCACAGAGTGGTTCTTCAGGACCTTCTACTGGACCGGCAACAGCACCGCCTCCTAGTAATGCAGGACAGTGGGCTAATATGCAGCATCAGCAACCATTGTTCCAAGCTAATGCTACTCAGTCCACTCAACCATTTACACCACCTGTAGGTGGAGCTGTAAACAATCAGCCATGGAATATATCTTCTGTACCTACAGTTCAAGGGCATCCAAATACAGCAATCCCACATGCATCCCATGATGCTACAAAGCCTGCCAATACAACCAGTGTTGTTTCACAACCTTCCACTGAAGTGAAACCAAGTGGAAGACAAGAACTTCCTGAGGATCTATTCACTATAAAATACCCATCCTACCCTGCACCGGTTCCTGGTTGGCAAATGGGTCTTCCCCATGGCATGGGTCTTCCCCGTGGCATGGGTATCTCAATGCAATATAATAACATGGTGCCTATGCCAAGTTTTCCGCAGCAATCAAAATCTGTCAATCCATTTGATGCTGGCGGTGAATCTCCCCAAGTTCAAGCTCCAACTTTTCCTTCCATGTCATCTTTGCATGGTGCTCTGCCCAGTATGCCACCTTCAGGAGCAATTCATCCTTCAAGCCTGGGTAATCCATCTCATACCTGGACTCCAACCCCGTCATCATCATATGTATCTGTCCTGCCTGGACAAGCACAAACTCATCCATCAGCTATGGGACCAAGGACTTACATGGTACAACAAATGCCACCACCTAACATGGCAATGCCAAGGCCAGAAGCTAGTAGTTTTGGAGCTGGAGGAGCTGTTTTCGGCTTGTCAAATCCAGAACAGCAGCTAACTAATTCGTTCTCCACCACTCCTGCCCCTAATGCCTTCCCTGCAGGTGGGAACCCATTCGGCTGA 2073 0.4645 MASRLKEDEKNERVIRGLLKLEPNRRCINCNSLGPQYVCTNFWTFVCTNCSGIHREFTHRVKSISMAKFTSQEVNALQAGGNQRAKEIYFKEWDAQRNSFPDSSNVDRLRDFIKHVYVDRRFTGERANDKPPRGKGDNDMYQGGSRSPPYEETYERRYSDRSSSGGRSPGYDQESRQYGDYGRSPGRPPIVNDWRREDRRVSDGDYKVESQSPDRARDVGSSSPPVVRPVREILGENVVPLRISEPPKPNSGRAADGSALTQRTASSSSLASSNGNPVDVKPEITKSLIDFDADPEPPVAPAISPAQQTTVPQPVMQPENPRADNWASFDVAPQATENSNPSPVNVNPLESVLSQLSVPASLPAHVSGVQAGPYVATAIPALDVTTPASVGGFSAFPQSGSSGPSTGPATAPPPSNAGQWANMQHQQPLFQANATQSTQPFTPPVGGAVNNQPWNISSVPTVQGHPNTAIPHASHDATKPANTTSVVSQPSTEVKPSGRQELPEDLFTIKYPSYPAPVPGWQMGLPHGMGLPRGMGISMQYNNMVPMPSFPQQSKSVNPFDAGGESPQVQAPTFPSMSSLHGALPSMPPSGAIHPSSLGNPSHTWTPTPSSSYVSVLPGQAQTHPSAMGPRTYMVQQMPPPNMAMPRPEASSFGAGGAVFGLSNPEQQLTNSFSTTPAPNAFPAGGNPFG 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181276g00011 690 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Stsc181276g00011 690 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Stsc181276g00011 690 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Stsc181276g00011 690 MobiDBLite consensus disorder prediction 593 627 - -
Stsc181276g00011 690 MobiDBLite consensus disorder prediction 587 627 - -
Stsc181276g00011 690 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Stsc181276g00011 690 Gene3D Arf GTPase activating protein 2 131 IPR038508 -
Stsc181276g00011 690 MobiDBLite consensus disorder prediction 665 681 - -
Stsc181276g00011 690 MobiDBLite consensus disorder prediction 255 280 - -
Stsc181276g00011 690 MobiDBLite consensus disorder prediction 190 214 - -
Stsc181276g00011 690 MobiDBLite consensus disorder prediction 123 325 - -
Stsc181276g00011 690 MobiDBLite consensus disorder prediction 434 501 - -
Stsc181276g00011 690 MobiDBLite consensus disorder prediction 665 690 - -
Stsc181276g00011 690 MobiDBLite consensus disorder prediction 434 468 - -
Stsc181276g00011 690 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 134 - -
Stsc181276g00011 690 MobiDBLite consensus disorder prediction 395 420 - -
Stsc181276g00011 690 MobiDBLite consensus disorder prediction 477 496 - -
Stsc181276g00011 690 CDD ArfGap_AGFG 12 122 - -
Stsc181276g00011 690 PANTHER ARFGAP/RECO-RELATED 1 690 IPR044820 GO:0005096
Stsc181276g00011 690 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Stsc181276g00011 690 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Stsc181276g00011 690 Pfam Putative GTPase activating protein for Arf 13 124 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181276g00011 Stsc-Chr181276 120425 127530 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181276g00011 12 122 C2H2 Transcription Factor Family AT4G21160 29.839 5.38e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181276g00011 - - gmx:102669541 918.302