Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181276g00008 ATGACAGAAACAAAGTCAACTAGCAAGATTTCCAAGAAACAGGATTCGAAAAAATATTCTGGTCCCAGCAATCAGCCTTCAAGGAAACAACATCGAAAGGGTGAAAACCCTACGCGGTTCGTTCCAGCTCCTGACCTGCCTTCTGATTTTGGACATTCTGACTCATGGGTCTGTAAGAATTCGGCTTGTAGAGCAGTTCTATCTAAAGATGATACATTTTGTAGAAGGTGCTCTTGCTGTATTTGCCACCTCTTCGATGATAACAAAGACCCTAGTCTTTGGTTGGTATGCACATCTGACTCCGCCCAAGGGGACTCCTGTGGTTTGTCTTGCCATATCGAGTGTGCTCTTCAGCATGAAAAAGTGGGAGTAGTTGATCATGGGCAACTGATGCAACTAGATGGCGGTTATTGTTGTGCATCCTGCGGTAAAGTTACCGGGATACTTGGATGTTGGAAGAAGCAGCTAAATATAGCAAAAGATGCTCGGCGTTTAGATGTGCTGTGTTATCGGATATACTTGAGCTTCAGGCTTCTGAAAGGAAGTTTGAGGTTTAAGCAACTGCATGAAATTGTACAAGAGGCAAAGGCTAAATTAGAAACGGAAGTTGGTTCAGTTAATGGGGTTTCTTCCAAGATGGCGCGTGGCATTGTCAGCAGACTCCCTATTGCCGGTGATGTACAGAAACTCTGCTCTCTTGCTATCGAGAAAGCCGATGAATGGTTGGCCACTGTACCCAATTCAAATCCAGAATCCGGAGAGGGCTCTCTTCCTGCTGCCTGCAAGTTTATTTTCGAAGAGGTAACAGCTTCATCGGTCAAAATAATTTTGATTGGAATACCTAATGCATCTCCCGAGGAAATTAAGGGTTACAAGCTCTGGTATTACAAGAGTAGGGAGGAATCACACACAAAAGATCCTGTTTGTGTCTTTCCAAAAGCTCAGAGGAGGATTTTGATATCTGATCTCCAGCCATGCACAGAATATACTTTTAGGATTATATCTTATACAGATAAGGGCGATTTAGGTCATTCCGAGGCCAAGTGTTTCACCAAGAGCATAGAGATATTGGGAAAAAGTCCATCTTCATCGGTTTCCATTGACCACAAGAAGGAGAGCCTTCAAACTGGAGACAATTCTTTTGGGTCCAAAATGGAGCCGAGTTCTTCGAAGGCTGACTCTGGGTTTAAAGTTCGAGACCTTGGAAAAATCTTGCATCTTGCCTGGGCTCAAGAACAAGGTTGCTTGGAGGGATTTTGCGGCGCTGATTTGAGAAATTGCTGTGCAGAGAGAGAAATGACCTTGCCTCGCAATCTGGAAGAGCGGTTCCCTTCCGTTGCACGAGGCCTTGATTTAAATGTTGCTTCAGTGCCTGATTTAAATGAAGAACTTACACCTCCTTTCGAGTCTTCCAGGGACGAAGATAATTGTTGCACTTTGCAGCAGGCTGTTGAGCCAGACGATGATGCGGCTTCCCATGATCTCGAAAAAAACTGTTTGGCAGGGTCGGATGGTAGTGGTGATTCCCAAATCTGGACACAAGGACCGGCCGGAGAAGTCCCGGCTGTTGACTCTCGTGTAGATGCATGCAAGAAAAGGTTAGCAAGCGCAAATGAAGAGGCACATGATTGTGACAGCACTTTGATGAACGGATCTCCCTTGCACATGCCGGATGGTTCATTCTCCTTGGATGAGAATTTCGAGTATTGCGTGAAAGTGATTCGTTGGCTAGAATGCCAGGGTCATATTAAACAGGAGTTTCGGTTGAAGTTACTGACATGGTTCAGTTTGAGGTCAACAGAACAAGAACGTAGGGTGGTTAACACGTTCATTCAGACTCTGATCGATGATCCAAGTAGTTTGGCCGGGCAACTTGTTGACTCATTCTCTGATATTATATCAATTAAGAGGGCAAGAAATGGGTTATGTAACAAAGCCGTGGGATCAAATTAA 1953 0.4465 MTETKSTSKISKKQDSKKYSGPSNQPSRKQHRKGENPTRFVPAPDLPSDFGHSDSWVCKNSACRAVLSKDDTFCRRCSCCICHLFDDNKDPSLWLVCTSDSAQGDSCGLSCHIECALQHEKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLNIAKDARRLDVLCYRIYLSFRLLKGSLRFKQLHEIVQEAKAKLETEVGSVNGVSSKMARGIVSRLPIAGDVQKLCSLAIEKADEWLATVPNSNPESGEGSLPAACKFIFEEVTASSVKIILIGIPNASPEEIKGYKLWYYKSREESHTKDPVCVFPKAQRRILISDLQPCTEYTFRIISYTDKGDLGHSEAKCFTKSIEILGKSPSSSVSIDHKKESLQTGDNSFGSKMEPSSSKADSGFKVRDLGKILHLAWAQEQGCLEGFCGADLRNCCAEREMTLPRNLEERFPSVARGLDLNVASVPDLNEELTPPFESSRDEDNCCTLQQAVEPDDDAASHDLEKNCLAGSDGSGDSQIWTQGPAGEVPAVDSRVDACKKRLASANEEAHDCDSTLMNGSPLHMPDGSFSLDENFEYCVKVIRWLECQGHIKQEFRLKLLTWFSLRSTEQERRVVNTFIQTLIDDPSSLAGQLVDSFSDIISIKRARNGLCNKAVGSN 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181276g00008 650 Pfam Fibronectin type III domain 265 343 IPR003961 GO:0005515
Stsc181276g00008 650 Pfam PHD - plant homeodomain finger protein 58 176 IPR032881 -
Stsc181276g00008 650 MobiDBLite consensus disorder prediction 361 392 - -
Stsc181276g00008 650 MobiDBLite consensus disorder prediction 1 16 - -
Stsc181276g00008 650 SUPERFAMILY Fibronectin type III 266 346 IPR036116 GO:0005515
Stsc181276g00008 650 Gene3D Immunoglobulins 243 354 IPR013783 -
Stsc181276g00008 650 MobiDBLite consensus disorder prediction 1 44 - -
Stsc181276g00008 650 CDD FN3 281 341 IPR003961 GO:0005515
Stsc181276g00008 650 ProSiteProfiles Fibronectin type-III domain profile. 257 356 IPR003961 GO:0005515
Stsc181276g00008 650 MobiDBLite consensus disorder prediction 361 390 - -
Stsc181276g00008 650 PANTHER VIN3-LIKE PROTEIN 2-RELATED 8 645 IPR044514 GO:0010048|GO:0040029
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181276g00008 Stsc-Chr181276 79364 87342 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181276g00008 55 642 PHD Gene Family AT3G24440 48.837 6.36e-180 522
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181276g00008 - - gmx:100780157 1098.57