Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181275g00031 ATGTATGCTTCAACTTCCTTCACTTCACACATCATTCATGAACTTGTAACAGAATCTCACTCAAGAAAGTTACTCATCCTTCCAAACCCACTTTCTCATCATCACGATGATTCCCCACCACCATCACCAACAACTCCAACAAACAACTCAACCGATTTATACCTGGGAAGCGGTTCCTTCGATGCCAACGTTGTGATGGTCCTCTCAGTCCTACTGTGCGCTCTTATTTGCTCCTTGGGATTAAACACAATCATAAGGTGTGCTTTGAAGTGTTCAGATTTGGTAATCAACGAAGACGATTCTTCATCATCCTCACCCTCAAGAACAACAAATCCTTCCAACACTACTACTCGATTGGCCAACACCGGAATCAAGAAGAAAGCTTTGAAGACTTTCCCCATAATTACATACGAGTCATCATCAACAGAGGTCACCGGTTTGGACACAGAGTGTGTGATATGCCTGTCGGACTTCACAAATGGTGAAAAGTTGCGTATTCTGCCAAAGTGTAACCATGGATTCCATGTTCGCTGCATTGACAAGTGGCTCACTTCTCATTCCTCTTGTCCCAAGTGCAGACAATGCCTAATTCACACCTGTCAAAAAATTGTTGGAGCAACTCACCAACCTCTACCTCAAACCATCATAAGGATCGAACCATTGGAGCCAGAAACCATGGTGCGTAATTATACACAATAA 699 0.432 MYASTSFTSHIIHELVTESHSRKLLILPNPLSHHHDDSPPPSPTTPTNNSTDLYLGSGSFDANVVMVLSVLLCALICSLGLNTIIRCALKCSDLVINEDDSSSSSPSRTTNPSNTTTRLANTGIKKKALKTFPIITYESSSTEVTGLDTECVICLSDFTNGEKLRILPKCNHGFHVRCIDKWLTSHSSCPKCRQCLIHTCQKIVGATHQPLPQTIIRIEPLEPETMVRNYTQ 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181275g00031 232 FunFam RING-H2 finger protein ATL73 111 198 - -
Stsc181275g00031 232 SUPERFAMILY RING/U-box 150 198 - -
Stsc181275g00031 232 MobiDBLite consensus disorder prediction 29 50 - -
Stsc181275g00031 232 ProSiteProfiles Zinc finger RING-type profile. 151 193 IPR001841 -
Stsc181275g00031 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 197 IPR013083 -
Stsc181275g00031 232 SMART ring_2 151 192 IPR001841 -
Stsc181275g00031 232 Pfam Ring finger domain 150 193 IPR001841 -
Stsc181275g00031 232 PANTHER RING-H2 FINGER PROTEIN ATL78 15 226 IPR044602 GO:0016567|GO:0016740
Stsc181275g00031 232 MobiDBLite consensus disorder prediction 97 120 - -
Stsc181275g00031 232 CDD RING-H2_EL5-like 150 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181275g00031 Stsc-Chr181275 203623 204546 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181275g00031 37 217 C3H Transcription Factor Family AT3G10910 43.956 6.29e-46 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181275g00031 K19040 - gmx:100527126 283.878