Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181275g00028 ATGAATGTGATGGCTTGTGAGCAATTTGATTACTCATTCAGCCCTCCCCCCATGAACCAATTTCTCCATGAATATATCTTACAAGATGCATTTCCAGTCCAAGCAGATTATCACATATCATCTTCTCCAAGCTTCATGGATGATGATATGTTTGATGAAATGCTTGACCAAGAATCCCTGACTGGATTCCTCCATCCAGAAAACTCACACCAGCCAGACTTTGATTTCATTGACCATAATGTTACAATGGCTATTGACTCTGAACTGTGTCAAGAAATCATCCCTATAGCCCAACAAGAACAAGACCTGCATGTCTCAAATGAAGAAGGAGATGCATACTTGATGGGAATTCAAGCAGAGCTAATGGGAGAAACTAGTTTGGCAGATCTATTGCTATTAGGAGCTGAAGCTGTTGAAGCACAGAACTTTGTTCTTGCTTTGGAAATCATAGAGAGGATTAACAATAATGCATCATCATCATCCTTTTTGGGAAATGATGATTCTTTATTGAACAGGTTGGCTCTATTCTTTGCTCGGGGTCTGTATTGTAAGAGTATAAATGCTCCTCAAGTGCAGTCTGATCCTGTTTCAACACAGAACAACGCTTTCGTCGTGTTTCAGATACTCCAGGAACTCTCTCCCTATGTAAAATTCGCTCACTTCACTGCTAATCAAGCTATCTTTGAAGCCACAGAAGGTGCTGAGGATGTTCATGTCATTGATTTCGATATCATGGAGGGGATCCAGTGGCCACCATTGATGATGGACCTTGCAATGAGGAAGAACACTTCTCTTAGAGTAACAGCTGTTGTTGCAGATCAGCAGAGTGTAGCATATGTTCAGCAAACAGGGAGAAGGCTAAAAGAGTTTGCAGATTCTATCGATTTTCCTTTCGCTTTCGATCAGATAATGATGGTTGGGGAGGAAGATCTTCAAAGAGTTGACCTTGGTCACACAGTTATAGTCAACTGTATGATACACCAATGGATGCCAAACAGAAACTTCTCATTGATCAAAACATTCCTTGATGGTGTAAGCAAGATATCTCCAAGGCTTGTTGTTTTGGTGGAGGAAGAACTTTTCAACTTTTCTAGGCTAAAATCGATGTCGTTTGTGGAGTTCTTCTGTGAGGCTTTGCACCACTACACTGCACTGAGTGATTCACTAGCTAGTAGTTTGTGGGGGTTTTACTCCTTAAAGGGGTTCAAGCGTGTTGCTATGAGTAGCTGTAATGTTTCACAGGCTAAGTTCTTGGTGAGCCTGTTTCGTGGAGGCTATTGGGTGCAATCTCAGGATTCTAGGTTGTCTCTGTGTTGGAAGTCAAGGCCTTTGACATCTGCTTCAACCTGGGTACCTGCAACGTTTCGCCGTTACAAGGTCAAATAG 1386 0.4199 MNVMACEQFDYSFSPPPMNQFLHEYILQDAFPVQADYHISSSPSFMDDDMFDEMLDQESLTGFLHPENSHQPDFDFIDHNVTMAIDSELCQEIIPIAQQEQDLHVSNEEGDAYLMGIQAELMGETSLADLLLLGAEAVEAQNFVLALEIIERINNNASSSSFLGNDDSLLNRLALFFARGLYCKSINAPQVQSDPVSTQNNAFVVFQILQELSPYVKFAHFTANQAIFEATEGAEDVHVIDFDIMEGIQWPPLMMDLAMRKNTSLRVTAVVADQQSVAYVQQTGRRLKEFADSIDFPFAFDQIMMVGEEDLQRVDLGHTVIVNCMIHQWMPNRNFSLIKTFLDGVSKISPRLVVLVEEELFNFSRLKSMSFVEFFCEALHHYTALSDSLASSLWGFYSLKGFKRVAMSSCNVSQAKFLVSLFRGGYWVQSQDSRLSLCWKSRPLTSASTWVPATFRRYKVK 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181275g00028 461 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 106 390 IPR005202 -
Stsc181275g00028 461 ProSiteProfiles GRAS family profile. 118 451 IPR005202 -
Stsc181275g00028 461 Pfam GRAS domain family 128 392 IPR005202 -
Stsc181275g00028 461 Pfam GRAS domain family 400 450 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181275g00028 Stsc-Chr181275 176568 178190 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181275g00028 127 450 GRAS Transcription Factor Family AT3G03450 29.581 2.49e-35 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc181275g00028 GRAS 3.1e-57 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181275g00028 - - gmx:100804613 563.533