Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181275g00023 ATGGTCAGAGACGATCTATACATAACGGTTCCCAGCTTCTTCCGATGCCCTATATCACTCGACGTCATGAAGTCCCCCGTCAGCCTCTGCACCGGCGTTACCTACGACCGCTCCAGCATCCAGCGCTGGCTCGACAACGGCAACAACACCTGCCCCGCCACCATGCAGGTCCTACAAACCAAGGAATTCGTCCCCAACCGCAACCTGCAGAGGCTCATCCAGATCTGGTCTGAATCCCTTCGCCACTCGACCGACTCACCGGATCGTACCGACTCGGTCCTTTCAAAGGACCAGGTCCTAGCCGCCTTCGCACACTTGCAATCCCGTCCCGACGACCGCCTCGACTCGCTCGCCAAAATCGCGAGTTTCGCGCGAGATTCTGAGGATAACCGCAAGTTCCTTGCGAGAATAGAAGCATTCGTGCCTGCGCTGCTCGGTTTCCTCCTCAATGTCCACGACGATTTTGAGTTCCTTGAGCAGGTTATTGTGATGTTGAATCTGGTTCTGGATAAAATCGAAGACCGCGAGGCCTTCAAAAATTCGATGCTCAAGAACCAGGGCAGTAATAGCAGCAGCTGCTGCTTGGATTCTCTGCTCCTCATTCTTCAACGAGGAAGCACCGATTCGAAAATCGCGTCCGCTAGGGTCTTGCAATCACTCGCCATGGATACGGAATCAAAGCTTTTGGTTGGGGAAAAGGAAGGCCTAATTTCTTTAGTCCTCAGGCTAATCGCGCCGGACAAAGATCCGGCGGTGATAGAGAACTCCTTGTCATGCCTGGTAGCAATCTCGACGGCGAAAAGGAACAAGTTGAGGCTGGTGCATCTCGGAGCAGTAAAAGCGCTCTCGAAGCTTCTAACGGAATCGAGCCTGAGTGCGTCGGCGGCGGAGAAGGTGCTGAAGCTTCTGGAAACCGTGTCGTCTACGAAAGAAGGGAGGGTGGAGATATGCGAGGACAGCACGTGCGTAGCGGCGATACTGAGCAAGGTGCTGAAGGTTTCGAGCGCGGCAACGGAACACGCCGTAACGACTCTGTGGAGCGTGTGCTATCTGTTTCGTGACCAGAAGGCGCAAGAAGCGGTTACGAAGGCTAACGGCTTAACGAAGATTCTGTTACTGATGCAGAGCAATTGTTCACCTCCTGTGCGCCAAATGTCCGCAGATTTGCTTAAGATTTTTAGAGTGAATTCCAAATCGTGTCTTTCTTGTTATGACACCAAAACCACCCATATCATGCCATTCTGA 1245 0.5293 MVRDDLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLQTKEFVPNRNLQRLIQIWSESLRHSTDSPDRTDSVLSKDQVLAAFAHLQSRPDDRLDSLAKIASFARDSEDNRKFLARIEAFVPALLGFLLNVHDDFEFLEQVIVMLNLVLDKIEDREAFKNSMLKNQGSNSSSCCLDSLLLILQRGSTDSKIASARVLQSLAMDTESKLLVGEKEGLISLVLRLIAPDKDPAVIENSLSCLVAISTAKRNKLRLVHLGAVKALSKLLTESSLSASAAEKVLKLLETVSSTKEGRVEICEDSTCVAAILSKVLKVSSAATEHAVTTLWSVCYLFRDQKAQEAVTKANGLTKILLLMQSNCSPPVRQMSADLLKIFRVNSKSCLSCYDTKTTHIMPF 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181275g00023 414 SUPERFAMILY ARM repeat 194 400 IPR016024 -
Stsc181275g00023 414 PANTHER WDSAM1 PROTEIN 9 402 IPR045185 GO:0061630
Stsc181275g00023 414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 90 IPR013083 -
Stsc181275g00023 414 SUPERFAMILY RING/U-box 5 79 - -
Stsc181275g00023 414 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Stsc181275g00023 414 CDD RING-Ubox_PUB 11 63 IPR045210 -
Stsc181275g00023 414 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Stsc181275g00023 414 Gene3D - 98 402 IPR011989 -
Stsc181275g00023 414 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Stsc181275g00023 414 Pfam U-box domain 10 79 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181275g00023 Stsc-Chr181275 133104 134348 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181275g00023 1 414 U-box Gene Family AT5G64660 52.225 8.36e-144 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181275g00023 - - gmx:100799627 581.252