Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181275g00016 ATGGCCTCCCTCTCCCTCATTTCCCTTCTCTCCCTCTCTCTCTTATTGTTCCTAACCCTCTCCTCCGCCACGCGTCACCACCACAGCAGCCACAACAAGCACTCCCCGGCTCCCTCCACCTCCACTCCCACCCCCATCCCCACGGCCGACGCCTCACCGGCAATCCAACAAGCCTGCAAGGGCACACGATTCCCCCAGCAATGCCAGTCCACTCTCTCCCAATCCACCACTCTCCCGCCCAACCCAACCTCCCTCCAAATCCTCCAAGCCGCCATCTCCGCCTCCTCCCAAAACCTTAAAACCGCCCAGTCCATGGTCAAGTCCATCCTCGACACCTCTTCCGACAGCCGCAACCGCACCGTCGCAGCCACAACCTGCCTCGAGGAACTCGCCAACTCCGACCACCGCCTATCTCAAGCCACCGACGCCCTGACACGTGACAAGACCAAGGACGCCCGCGCCTGGCTCACCGCCGCCCTCGTCTACCAGTACGACTGCTGGAATGGCCTCAAGTACGCCAACGACACCTCCAAGGTCGGCCAAACCATGTCGTTTATCGACAACCTCACCCAACTCTCAAGCAACGCGCTCTCCATGGCTTTTTCCTACGACGCATTCGGCAAAGACACGGCGACGTGGAAGCCACCGGCGACAGAGCGCGACGGATTCTGGGAGGCGACAGGGTCGTCCGGCGGAAGTTCCGTGCCGGTGTTTCCGACGAACCTGAAGGCGGACGCTACGGTGTGCAAGGATGGTAGTAATGGGTGTTACAAGACGGTGCAGGAAGCGGTTAACGCGGCGCCGAGTAACGTTAACGGCGGAAGGAGGTTCGTGATTTACATTAAAGAAGGGGTTTATGAAGAGACCGTTAGAGTTCCGTTAGGAAAGACGAATTTAGTGTTCTTGGGCGACGGCATGGGCAAAACGGTCATTACAGGATCTGCTAACGTTGGCCAGCCCGGCATGACCACTTACAACTCTGCCACAGTCGCGGTTCTTGGGGATGGGTTCTTGGCAAAGGATCTAACAATACAGAACACTGCTGGGCCTGATGCTCACCAAGCAGTGGCCTTCAGACTTGACAGCGATCTCTCAATCATTGAGAGCTGTGAATTCGTAGGCAACCAAGACACACTCTATGCTCATTCCCTCCGCCAGTTCTACAAATCATGCCGGATCATTGGAAATGTTGATTTCATCTTCGGAAACTCAGCCGCCATCTTCCAAGACTGCCAAGTCTTGGTGGCTCCAAGGCAGCTGAAGCCGGAGAAGGGGGAGAACAACGCTGTCACGGCCCACGGCAGGACAGATCCGGCGGAATCGACAGGGTTTGTGTTCCAGAACTGCCTGATCAATGGGACGGAGGAATACATGAAGTTGTATAATAGCAATCCGAAAGTGCACAAGAACTACTTGGGTAGGCCTTGGAAAGAGTACTCTAGAACAGTTTACATGAATTGCTTCTTGGAAGCACTGATCACACCCCAGGGTTGGATGCCATGGAGTGGTGACTTTGCTCTCAAGACACTCTACTATGGAGAATTTGAGAACAAGGGACCTGGTTCTGATTTGTCTCAGAGGGTATCATGGAGTAGTAAGGTCCCTTCTGACCATGTTTTCGCCTATTCAGTGCAGAATTTCATCCAAGGAGATGAGTATATTCAATTCTCAAGGTCAAGGAGCCATCACTCCTAA 1695 0.5457 MASLSLISLLSLSLLLFLTLSSATRHHHSSHNKHSPAPSTSTPTPIPTADASPAIQQACKGTRFPQQCQSTLSQSTTLPPNPTSLQILQAAISASSQNLKTAQSMVKSILDTSSDSRNRTVAATTCLEELANSDHRLSQATDALTRDKTKDARAWLTAALVYQYDCWNGLKYANDTSKVGQTMSFIDNLTQLSSNALSMAFSYDAFGKDTATWKPPATERDGFWEATGSSGGSSVPVFPTNLKADATVCKDGSNGCYKTVQEAVNAAPSNVNGGRRFVIYIKEGVYEETVRVPLGKTNLVFLGDGMGKTVITGSANVGQPGMTTYNSATVAVLGDGFLAKDLTIQNTAGPDAHQAVAFRLDSDLSIIESCEFVGNQDTLYAHSLRQFYKSCRIIGNVDFIFGNSAAIFQDCQVLVAPRQLKPEKGENNAVTAHGRTDPAESTGFVFQNCLINGTEEYMKLYNSNPKVHKNYLGRPWKEYSRTVYMNCFLEALITPQGWMPWSGDFALKTLYYGEFENKGPGSDLSQRVSWSSKVPSDHVFAYSVQNFIQGDEYIQFSRSRSHHS 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181275g00016 564 Gene3D - 242 562 IPR012334 -
Stsc181275g00016 564 MobiDBLite consensus disorder prediction 34 51 - -
Stsc181275g00016 564 SUPERFAMILY Pectin lyase-like 242 556 IPR011050 -
Stsc181275g00016 564 MobiDBLite consensus disorder prediction 27 51 - -
Stsc181275g00016 564 Pfam Plant invertase/pectin methylesterase inhibitor 54 199 IPR006501 GO:0004857
Stsc181275g00016 564 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 199 IPR035513 -
Stsc181275g00016 564 FunFam Probable pectinesterase/pectinesterase inhibitor 51 53 202 - -
Stsc181275g00016 564 Pfam Pectinesterase 245 551 IPR000070 GO:0030599|GO:0042545
Stsc181275g00016 564 SMART PMEI_2 50 199 IPR006501 GO:0004857
Stsc181275g00016 564 PANTHER PECTINESTERASE 17 552 - -
Stsc181275g00016 564 NCBIfam pectinesterase inhibitor domain 39 198 IPR006501 GO:0004857
Stsc181275g00016 564 CDD PMEI-like_3 58 199 - -
Stsc181275g00016 564 FunFam Pectinesterase 239 563 - -
Stsc181275g00016 564 Gene3D Invertase/pectin methylesterase inhibitor family protein 53 202 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181275g00016 Stsc-Chr181275 90298 92907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181275g00016 47 557 Carbohydrate Esterase AT5G09760 67.442 0.0 737
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181275g00016 - - mtr:11442613 830.476