Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181275g00015 ATGAGTGGAACTGGCAGAAAGCACCCTTCAAGGAGGGATTTTAGAGATGATCCTGAATTTGCAAGAAGTAGTCGGAGTAGGAGCCCTGCATGCGATTTCAGGTGGGATTCAGAAGTTGGTGACAGGAAAAGAATGAGGCCTGGAGGATCAACACGACCATGTAGAGATTTCGCTGTTGGAAACTGCAGAAGAGGCAGGCATTGCCACTTCCTTCATGATGATAATGAAAACTATGACGATCGCGATGGCTGGGAAAATAGAAGCAGACAAGACAGGGCTCTCAGATATTCTGCACCCTATGAGGGTGGGGACTATTCTCTTAGAAGTGGAAGATCTAATGATGCTTGTATTCATTTTGCAAAAGGATGGTGTAGAATGGGAGCATCGTGCAAGTATATACACGACGACAATTCTGATGGGTTTCGTGAAATTTCCATGGCAGAATCAACCAGAGAAAGGGAAATTGATAGGAGGCACATGGAGAGTTCTTATGAGCGGGATGGTGCTCATGGTCCAAATCACAGTGGTGATATTCCTTGCAAATTTTTTGCTTTTGGAAATTGTCGGAATGGTAAACATTGCAGGTTTTCTCATGATAGTCAAGCATTTCAGAGCCCTAACAGAAGTTTAAGGGATGATAGGATGAGTTATTATGTTCGAGATGAGGCATTTGATATACAAAAATTGAATGATTCAAGTAGTCCGAATAGAAGGCTAAGGGATGACAGGTGGCATTTCAAAACCAACATGGCTGATTTTGATGAAGCTTGGGATGGTCCAGAAAAGAATGACTTAGGTGCTGTCTTTGATACAGAAAATCCGGTTGAGGATAACACCAACAGAATTTCGGGTGCCCCAGAGCGTAGTTTCAGTGGTTGGCTAATGAATGATGGATTGGACCGTAGTTTAGATAAGGGAAGAGTGCATGCTCAATCAGCGTTTTCAAGTGCAAAGAACAAAACCAACCATTGGGAGACACAAAATGCTGGAGACAACATGGGTAGTTCCCAGTCAATAAATACAGTGATCTGGCCGGGGGATGAAAAAATGTCTCCTGATTGGAAGTATGGTGTGGGATCTTCCTGCAAAACTGAAGAGAAGCATGGGCAGAATAAACAAGAAGTTGCTGCAGGACAAAGATTTAATCAGAATGCTCTGAATTTAAATGCTTCGAGTTGTCAAGTTGTTGGACAAAGTCAAATGGCAGTTTCTGTTGCTGCTCCAAGAGTGGGAATTGTAGAAAGTATGCAGAATCAGGAAATCAATATTGAGAAGAAGTGCACTGTTGAGCCAAACATCATGGAGGCGATCCTATCACAAATCAGTTCAAGAGATCCTTCATCTCAGAACATGGTTAGCACAGAACAGCTTGCTCAAATAACCAGCATCTCAGCCTCTCTGGCTCAAATCATTGGTTCGGCTAAGCAGCTTCCACAACTCAATGCTACTTCAAAGGATACTCCTTTACTAGGCAAAACAAAGGATTATCCTGTGGTTGGATCCCAAAAGCAGTATGATCCAATTTTTGACAGTATTGAAACAAAGGATGCTCATGCAAGTTGCATCCAACCATACTTTTCCCCAATTATAAAAATTATAAATGAAGCAGAAGAAATTCCAGCACCGTCATCTAAGTTGATGAAACAAAATCTTGATTATTCTAGTAAAACTGCCTTTCCAGACAGACCACTTGTTAAGTGTGACCACACTATTCAGTTGCAGCAGCAAGGTAAAAATATTGAAATTAACAAGGAGAACGATGTAGTGATAGCTGACGAAAAGCATAGTTTGCAATCTGCTAATGAAATCACAAAAGAGAATATTCCTATGGAAAACATGGATCAAAATGGTTCAACTGATGAGGCCAAGAAAACAAAGGATGTTAAAGGGGTTCGTGCATTTAAATATTCACTGGTGGAGTTTGTCAAGGAGCTTCTAAAACCAACATGGAAAGAAGGTCAAATCACCAAGGAAGATTATAAATCAATTGTGAAGAAAGTCGCTGATAAAGTAGTCGGCACGGTGCAGCAGGCAAATATTCCTCAAACACAGGAGAAAATTGACCACTACCTATCATTGTCAAAACCAAAGCTTAACAAACTTCTACAGGCATACGTAGAAAAGGCTCAGAAGGCATAA 2139 0.4114 MSGTGRKHPSRRDFRDDPEFARSSRSRSPACDFRWDSEVGDRKRMRPGGSTRPCRDFAVGNCRRGRHCHFLHDDNENYDDRDGWENRSRQDRALRYSAPYEGGDYSLRSGRSNDACIHFAKGWCRMGASCKYIHDDNSDGFREISMAESTREREIDRRHMESSYERDGAHGPNHSGDIPCKFFAFGNCRNGKHCRFSHDSQAFQSPNRSLRDDRMSYYVRDEAFDIQKLNDSSSPNRRLRDDRWHFKTNMADFDEAWDGPEKNDLGAVFDTENPVEDNTNRISGAPERSFSGWLMNDGLDRSLDKGRVHAQSAFSSAKNKTNHWETQNAGDNMGSSQSINTVIWPGDEKMSPDWKYGVGSSCKTEEKHGQNKQEVAAGQRFNQNALNLNASSCQVVGQSQMAVSVAAPRVGIVESMQNQEINIEKKCTVEPNIMEAILSQISSRDPSSQNMVSTEQLAQITSISASLAQIIGSAKQLPQLNATSKDTPLLGKTKDYPVVGSQKQYDPIFDSIETKDAHASCIQPYFSPIIKIINEAEEIPAPSSKLMKQNLDYSSKTAFPDRPLVKCDHTIQLQQQGKNIEINKENDVVIADEKHSLQSANEITKENIPMENMDQNGSTDEAKKTKDVKGVRAFKYSLVEFVKELLKPTWKEGQITKEDYKSIVKKVADKVVGTVQQANIPQTQEKIDHYLSLSKPKLNKLLQAYVEKAQKA 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181275g00015 712 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 115 135 IPR000571 GO:0046872
Stsc181275g00015 712 Pfam CCCH-type zinc finger 179 199 IPR041367 -
Stsc181275g00015 712 Pfam RNA-binding, Nab2-type zinc finger 53 72 - -
Stsc181275g00015 712 ProSiteProfiles Zinc finger C3H1-type profile. 48 75 IPR000571 GO:0046872
Stsc181275g00015 712 MobiDBLite consensus disorder prediction 147 171 - -
Stsc181275g00015 712 SMART c3hfinal6 50 74 IPR000571 GO:0046872
Stsc181275g00015 712 SMART c3hfinal6 174 200 IPR000571 GO:0046872
Stsc181275g00015 712 SMART c3hfinal6 111 136 IPR000571 GO:0046872
Stsc181275g00015 712 SUPERFAMILY CCCH zinc finger 50 76 IPR036855 GO:0046872
Stsc181275g00015 712 SUPERFAMILY CCCH zinc finger 111 135 IPR036855 GO:0046872
Stsc181275g00015 712 Gene3D - 171 240 - -
Stsc181275g00015 712 MobiDBLite consensus disorder prediction 1 33 - -
Stsc181275g00015 712 Gene3D - 48 138 - -
Stsc181275g00015 712 ProSiteProfiles Zinc finger C3H1-type profile. 179 201 IPR000571 GO:0046872
Stsc181275g00015 712 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 13 710 - -
Stsc181275g00015 712 ProSiteProfiles Zinc finger C3H1-type profile. 110 137 IPR000571 GO:0046872
Stsc181275g00015 712 SUPERFAMILY CCCH zinc finger 177 199 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181275g00015 Stsc-Chr181275 77063 82667 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc181275g00015 zf-CCCH_4 4.3e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181275g00015 - K22909 gmx:100783856 722.235