Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181275g00014 ATGGATACTACAACAAATAATGGTAGTGGTGCCTTCATCACAAGCACTGCTACCACTACTACTGCTACTTGTTGGACACAAGCTCATCATCATCATGATCACATAATTCACCAAATCCCTAATATTTTGGCTTCTCCTCCTCCTTCCATTTTCCCAAACTACCACCACCTTCTTCAAATGCATCATCAAACAACAACCACTACTACTACACTACCCTCTACTTCTTCTTCTTCATCCTCAGGCTTCCTTGGCGACATACTTGGAGTAGTGCGCATAGAACAACAAGATCATGAAGAAGATGAAGAGCCAGAAGAGGAGCTCGGAGCCATGAAGGAGATGATGTACAAGATCGCAGCTATGCAGCCCGTGGACATCGACCCCGCCACCATCCGGAAGCCAAAGAGGAGAAACGTTCGCATCAGCGACGACCCTCAGAGCGTGGCGGCCCGCCACCGCAGGGAGAGGATCAGCGAGAAGATTCGGATCCTTCAGAGGCTTGTTCCCGGTGGAACAAAGATGGACACTGCCTCCATGCTGGATGAAGCAATTCGCTATGTTAAGTTCTTGAAGAGACAAATTAGGTTGCTTCAATCCACTCCTCCTCCTCCTCCTCCTCCTCAACCGCCACAATCCAATTATATAAACCCTATTATTAACACTAACACCGCCTTCTCTTTAGGCCCTCCCCCTACTTCTGATTGGCCTTTTGCACCTGCGGCCGCCTCCTCCTCCTCCCTCTTGAATGTTCCGGCTGCCATCACCACACTTGGATTCAATGCCGGAGATCCTGATGCCCCTCTCTAG 804 0.495 MDTTTNNGSGAFITSTATTTTATCWTQAHHHHDHIIHQIPNILASPPPSIFPNYHHLLQMHHQTTTTTTTLPSTSSSSSSGFLGDILGVVRIEQQDHEEDEEPEEELGAMKEMMYKIAAMQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSTPPPPPPPQPPQSNYINPIINTNTAFSLGPPPTSDWPFAPAAASSSSLLNVPAAITTLGFNAGDPDAPL 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181275g00014 267 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 140 189 IPR011598 GO:0046983
Stsc181275g00014 267 Pfam Helix-loop-helix DNA-binding domain 150 189 IPR011598 GO:0046983
Stsc181275g00014 267 Gene3D - 143 200 IPR036638 GO:0046983
Stsc181275g00014 267 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 146 199 IPR036638 GO:0046983
Stsc181275g00014 267 CDD bHLH_AtIND_like 141 198 - -
Stsc181275g00014 267 SMART finulus 146 195 IPR011598 GO:0046983
Stsc181275g00014 267 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 23 225 IPR045843 GO:0003700|GO:0006355
Stsc181275g00014 267 FunFam BHLH transcription factor 143 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181275g00014 Stsc-Chr181275 66455 67258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181275g00014 107 207 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G09750 90.196 1.59e-49 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc181275g00014 HLH 1.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181275g00014 - - adu:107480233 285.419