Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181275g00007 ATGGAGAACGGGAAAGTGATTCCGGGGTTTCGTTTCCATCCCACTGACATGGAACTGTTGAAATATTTTCTGAAGAAGAAGGTGACAGGTAAAAAGCTCCCCAATGTGATCGCGGAGCTTGACGTTTATGGGTACTGTCCCCAGGATCTCCCAGGGAAGTCACATCTGAAAAGTGGAGATCAGGAGTGGTACTTCTTCTGTCCAAGAGAAAAGAAATATTCAATTGGGCGGTGGACAAACCGTGCTACAAAGAATGGGTACTGGAAAGCTACCGGGAAGGACAAAGCTATTGTTCAACATGATAATAAGCAAACCGTGGGGATGATGAAAACCCTTGTCTTCCACACTGGTAAAGCGCCTTGTGGGCTCCGAACTGGTTGGTTTATGCATGAGTATAGGCTTCAAGATAAGCACCTTACTGACAAAGGAATTGCTCAGGACTCTTACGTGATTTGTAAGGTGTTCCAGAAGGAACTTGCTGGCCCTAGGACTAGGAGCCGTGCACAATATGAGAAACCATTTAATGATGATGATGATGATGATGATCACTTTGATGAAGCATCAGTTTCCATTCAGACTATCCCATTTGATGGCTCTTCTGAGATTGAAACAATTACTATTTCAAGTGGGTCTGAATCTGTAGATACTTCTCCTGTCCCACCAACCCCTTCTTCAGATACAAGCATTCGCAGTGTTAAGGAGGATAATGTTAATAATTCAACAGTGCTTGATCTCTCCAAAGAAGAAAAAACATTGCCTAAGGAAAATATTGCTGGCGATGACTCCTTGAGTAAGTTTTTTGAGGGATTAGGAGACCTTGAATCTGAATATACTCCAAATGGATTGGGGTTGGATGACTTTGCCCCAAATGGAATAAACGATGATGACTTGGAGTACTTGGAATTACTTGATCTCGATTTCTTTTAG 927 0.4261 MENGKVIPGFRFHPTDMELLKYFLKKKVTGKKLPNVIAELDVYGYCPQDLPGKSHLKSGDQEWYFFCPREKKYSIGRWTNRATKNGYWKATGKDKAIVQHDNKQTVGMMKTLVFHTGKAPCGLRTGWFMHEYRLQDKHLTDKGIAQDSYVICKVFQKELAGPRTRSRAQYEKPFNDDDDDDDHFDEASVSIQTIPFDGSSEIETITISSGSESVDTSPVPPTPSSDTSIRSVKEDNVNNSTVLDLSKEEKTLPKENIAGDDSLSKFFEGLGDLESEYTPNGLGLDDFAPNGINDDDLEYLELLDLDFF 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181275g00007 308 MobiDBLite consensus disorder prediction 207 230 - -
Stsc181275g00007 308 MobiDBLite consensus disorder prediction 164 184 - -
Stsc181275g00007 308 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 225 - -
Stsc181275g00007 308 Pfam No apical meristem (NAM) protein 8 134 IPR003441 GO:0003677|GO:0006355
Stsc181275g00007 308 ProSiteProfiles NAC domain profile. 6 157 IPR003441 GO:0003677|GO:0006355
Stsc181275g00007 308 SUPERFAMILY NAC domain 6 157 IPR036093 GO:0003677|GO:0006355
Stsc181275g00007 308 Gene3D NAC domain 15 160 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181275g00007 Stsc-Chr181275 18876 20329 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181275g00007 1 213 NAC Transcription Factor Family AT5G09330 48.611 1.97e-63 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc181275g00007 NAM 4.1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181275g00007 - - adu:107480257 402.905