Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181274g00028 ATGGCTTCTTCTCCCAATGTTCTTCTTTGTCTTCTCTTCTCTCTCTTGGCAACTTCATCTTTTGCTTTTCATGTTTCAATCAAAACAACGTACATAGACCCGCTAAGTTGCTCTGTAGAGACTGCTAATACATGCACTGCATCACTCTACCGCATAACTCGTGATGATTACAGCCTTGAACAAATTGCATTTGATTACTCTGTTAACACCTCACAAATCAAGCCTATAACGTACGAAACAAGGCAAGATTACCTCATAACAGTTCCTTGTTCTTGCAAGAACACACAAAACCTCAGCGGCTATTTCTACCATACAACCTACAAAAATGTGAAGCAAGGTGACATCTTTGTGAACATATCAACCACTGTTTACAGTGGACAGGCCATGCCCATCACCCGAGTCATAATTCCAGGAGAAGATCTGCCAATAGACATTCCATGTGGGTGTTCCGAGGATGAGGCTCAAAGAGTAGTCACATATACAGTGCAGCAGGATGATACCCCAGAAAAAATTTCCCTTCTGCTTAATGCTACACTCCCTGCACTGTTCAGAATGAACAAGATTCTAGCTCAGAAACCTGGTTTCATTGATGTTGGTTGGGTGCTTTTTGTTCCTTTGGAATTGAATGGGGTTCCTCCACAACCCACAGAAAAAATGAAAAAGAATTGGCCAATGATAGTCGGTATGGTCGCGGGAATTCTGTTATTTTCAATTATCATTGTCACCATTCTCATAATTCTTTGGAGAAGGAGAGTCCATCAAATGATCAAAGATGATTCCCCAGTTGTCTCTAAAAGATCATTTATCAACAGAAATGTTACCTTGCATAAGTCCACCCTTTACAAAGAATACATGGGAGATGTAATGCAAATTGAGTCAGAGAGGCCAGTGATATATGGTCTTGAGGAGATTGAAGAGGCTACAAATAACTTTGATGAATCTCGAAGAATTGGAGTTGGTGGATATGGGAGTGTCTATTTTGGAATCTTAGAGCAGAAGGAGGTTGCTGTGAAGAAGATGAGGTCTAATAAGTCTAAAGAGTTCTATGCAGAACTCAAGGCCTTGTGTAAGATCCATCATATCAACATTGTGGAGCTATTAGGATATGCCAGTGGAGAAGATCACCTCTATTTAGTGTATGAGTATGTTTCAAATGGATCTCTCAGTGAACATATTCATGATCCATTAGAGAAAGGGCACCAGCCTCTTTCTTGGAATGCAAGGGTTCAGATTGCACTGGATGCAGCAAGAGGTCTTGAATACATACATGATCATACAAAAGCTCGATATGTGCATCGCGACATAAAGACCAGCAATATTCTTGTTGATGAGAAGCTCAGAGCTAAGGTAGCAGATTTTGGACTTGCAATGCTGGTGGACAGGACCAATGATGAAAATTTCATAGCAACAAGGCTTGTTGGAACACCGGGATACCTTCCACCTGAATCTGTGAAGGAGCTTCAGGTGACCCCAAAAACCGATGTGTTTGCATTTGGAGTGGTTCTAGCAGAACTCATAACAGGGAAACGTGCACTGTTTCGGGAGAACAACGAAGAAGGCACCAAAATGAAATCACTTATTTCACTTGTACATCAAATATTCCAAGATGATGTCCCAGAGAGTGCTTTAGAAGATGTGATAGATAAGAACCTTGAAGCACACTACCCCGTTGAATTCGTCTTCAAGGTAGCAGAGATAGCAGGGTGGTGCTTGCAAGAAAATCCAGTGGAAAGGCCTGAAATGAGGGACATAGTTGGGGCATTGTCACAGATAGTAATGTCCTCCATAGAATGGGAAGCATCACTTGGTGGAAACAGCCAAGTCTTCAGTGGTGTCTTTACTGGAAGATGA 1851 0.4165 MASSPNVLLCLLFSLLATSSFAFHVSIKTTYIDPLSCSVETANTCTASLYRITRDDYSLEQIAFDYSVNTSQIKPITYETRQDYLITVPCSCKNTQNLSGYFYHTTYKNVKQGDIFVNISTTVYSGQAMPITRVIIPGEDLPIDIPCGCSEDEAQRVVTYTVQQDDTPEKISLLLNATLPALFRMNKILAQKPGFIDVGWVLFVPLELNGVPPQPTEKMKKNWPMIVGMVAGILLFSIIIVTILIILWRRRVHQMIKDDSPVVSKRSFINRNVTLHKSTLYKEYMGDVMQIESERPVIYGLEEIEEATNNFDESRRIGVGGYGSVYFGILEQKEVAVKKMRSNKSKEFYAELKALCKIHHINIVELLGYASGEDHLYLVYEYVSNGSLSEHIHDPLEKGHQPLSWNARVQIALDAARGLEYIHDHTKARYVHRDIKTSNILVDEKLRAKVADFGLAMLVDRTNDENFIATRLVGTPGYLPPESVKELQVTPKTDVFAFGVVLAELITGKRALFRENNEEGTKMKSLISLVHQIFQDDVPESALEDVIDKNLEAHYPVEFVFKVAEIAGWCLQENPVERPEMRDIVGALSQIVMSSIEWEASLGGNSQVFSGVFTGR 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181274g00028 616 ProSiteProfiles Protein kinase domain profile. 311 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181274g00028 616 SMART LysM_2 159 205 IPR018392 -
Stsc181274g00028 616 ProSitePatterns Protein kinases ATP-binding region signature. 317 339 IPR017441 GO:0005524
Stsc181274g00028 616 ProSitePatterns Serine/Threonine protein kinases active-site signature. 430 442 IPR008271 GO:0004672|GO:0006468
Stsc181274g00028 616 Gene3D LysM domain 151 217 IPR036779 -
Stsc181274g00028 616 Pfam LysM domain 160 205 IPR018392 -
Stsc181274g00028 616 FunFam PTI1-like tyrosine-protein kinase 3 383 602 - -
Stsc181274g00028 616 SUPERFAMILY LysM domain 158 205 IPR036779 -
Stsc181274g00028 616 Pfam Protein kinase domain 312 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181274g00028 616 Gene3D Transferase(Phosphotransferase) domain 1 383 601 - -
Stsc181274g00028 616 Gene3D Phosphorylase Kinase; domain 1 289 382 - -
Stsc181274g00028 616 SUPERFAMILY Protein kinase-like (PK-like) 297 592 IPR011009 -
Stsc181274g00028 616 SMART serkin_6 311 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181274g00028 616 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 29 612 IPR044812 GO:0019199|GO:0045087
Stsc181274g00028 616 FunFam Kinase family protein 286 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181274g00028 Stsc-Chr181274 150743 153596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181274g00028 285 616 Receptor kinase-like Gene Family AT1G51940 52.226 1.05e-117 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Stsc181274g00028 Pkinase 2.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181274g00028 - - gmx:100791718 786.949