Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181274g00018 ATGGCTCTTCTCCTGCTTCTCTTGTTGTTCTTCTCTTGCTTATCAACTCCTTCACTGTCAGACCCCAGAGCCACCAAGGCAGCCATGCTCTGCACCAACAGAACCGCTCCTACGCCTTCCCGTCAACTCTTCGTATCAAACTTCCTTGCTGCCATGGACGCACTCACCCCTCTCATCTCTGCTAAAAGGTACGGATCATCCATCAACGGGACCCACACCTTGACCGTCTACGCCTTCGGGCAGTGTATGAAGGACCTCTCTCAGCAAGACTGCAACATGTGCTTCGCCCAGTGCAAGACTCAGATCCTCAACTGCCTCCCCTTCCAGAAAGGGACACGTGGCGGCTCCCTCTTCTTCGATGGCTGCTACCTCAGGTATGACGATTATAACTTCTTCAACGAGACCATCACCGATCGAGACACCTCCGTCTGTAACGGCACCAGTAACAAAAACGGCGTCGTTTACAAGGCCAATGCTTTGCAGTTGGTGTCCAACTTGAGTCATCTGGCGCCCAAGAACGGTGGCTTCTTCGTTGCCTCATTGAGCCGCAAGAATGTCTCTGTTTATGGTTTGGCTCAGTGCTGGGAATATGTTAATGCAACTTCTTGCAGGAACTGTTTGGCTGATGCTGTTACTAGAATCGGTTCTTGTCCTCCCAAACAAGAAGGGAGGGCGCTCAATACTGGTTGTTACTTGAGGTATTCCTCTCAAAAGTTTTATGACAATTCAACCGTTGTGGCTTCTTCTTCTGGGAATCATGGACGTCGCAAACTAGCTATAATTCTGGCCGCATCTTTTGCTGCCCTGGCTCTTGTTCTGGCTGCTGCAACATTTGCTTTCTTTGCAAGGAAGAATCTACTCAAGAGGAGGAGAGATAGAAGACAGTTTGGTGCTATATTGGATACAGTGAACAAGTCCAAGCTAAACATGGCATATGAAATCCTTGAAAAAGCAACAAATTACTTTAATGATGACAATAAGCTAGGACAAGGTGGATCAGGCTCAGTTTATAAAGGAGTTCTGCCTGATGGAAATGTTGTGGCCATAAAAAGGCTTAGCTTTAACACAACGCAATGGGCAGATCATTTCTTTAATGAGGTCAATTTGATAAGCGGCATTCATCACAAGAATCTTGTAAGGCTTTTGGGATGCAGCATTACCGGACCTGAAAGCCTTTTGGTTTATGAATATGTGCCTAACAAGAGTCTCCATGATCACCTTTCAGCTAGGAGAATTTTGCAGCCGTTGACTTGGGAAGTAAGGTATAAGATCATATTAGGAATTGCTGAGGGCATGGCCTATCTTCATGAGGAGTCACATGTCAGAATCATTCATAGAGACATAAAATTAAGCAACATTCTGCTAGACAATGACTTCACACCCAAGATTGCGGATTTTGGACTTGCCAGATTGTTTCCAGAAGATAAGTCTCACATTAGCACAGCCATTGCTGGCACACTTGGTTACATGGCTCCTGAATATGTAGTTCGTGGTAAGTTGACTGAGAAAGCAGATGTTTTCAGTTTTGGAGTTCTAGTTGTTGAAATTGTTTCTGGCAGAAAGAACACCTCCTTCATCACAAGTTCATCCTCTATCTTACAGACGGTAACTGTCATCTTCTGCCGTGCTTCTACGTATTTCTTGGACAACGTTTCCTTTGCTGATTATCATTTTTCTTTTTCCTTCTCCATTTATTAA 1698 0.4499 MALLLLLLLFFSCLSTPSLSDPRATKAAMLCTNRTAPTPSRQLFVSNFLAAMDALTPLISAKRYGSSINGTHTLTVYAFGQCMKDLSQQDCNMCFAQCKTQILNCLPFQKGTRGGSLFFDGCYLRYDDYNFFNETITDRDTSVCNGTSNKNGVVYKANALQLVSNLSHLAPKNGGFFVASLSRKNVSVYGLAQCWEYVNATSCRNCLADAVTRIGSCPPKQEGRALNTGCYLRYSSQKFYDNSTVVASSSGNHGRRKLAIILAASFAALALVLAAATFAFFARKNLLKRRRDRRQFGAILDTVNKSKLNMAYEILEKATNYFNDDNKLGQGGSGSVYKGVLPDGNVVAIKRLSFNTTQWADHFFNEVNLISGIHHKNLVRLLGCSITGPESLLVYEYVPNKSLHDHLSARRILQPLTWEVRYKIILGIAEGMAYLHEESHVRIIHRDIKLSNILLDNDFTPKIADFGLARLFPEDKSHISTAIAGTLGYMAPEYVVRGKLTEKADVFSFGVLVVEIVSGRKNTSFITSSSSILQTVTVIFCRASTYFLDNVSFADYHFSFSFSIY 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181274g00018 565 ProSiteProfiles Gnk2-homologous domain profile. 25 131 IPR002902 -
Stsc181274g00018 565 ProSiteProfiles Protein kinase domain profile. 322 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181274g00018 565 Gene3D - 24 131 IPR038408 -
Stsc181274g00018 565 Gene3D - 138 239 IPR038408 -
Stsc181274g00018 565 FunFam Cysteine-rich receptor-like protein kinase 3 140 239 - -
Stsc181274g00018 565 Pfam Protein kinase domain 323 526 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181274g00018 565 FunFam Putative DUF26-domain receptor-like protein kinase family protein 282 397 - -
Stsc181274g00018 565 Gene3D Transferase(Phosphotransferase) domain 1 398 549 - -
Stsc181274g00018 565 FunFam Lectin-domain containing receptor kinase A4.3 398 551 - -
Stsc181274g00018 565 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 77 537 - -
Stsc181274g00018 565 ProSitePatterns Serine/Threonine protein kinases active-site signature. 443 455 IPR008271 GO:0004672|GO:0006468
Stsc181274g00018 565 Gene3D Phosphorylase Kinase; domain 1 282 397 - -
Stsc181274g00018 565 ProSiteProfiles Gnk2-homologous domain profile. 137 239 IPR002902 -
Stsc181274g00018 565 ProSitePatterns Protein kinases ATP-binding region signature. 328 350 IPR017441 GO:0005524
Stsc181274g00018 565 Pfam Salt stress response/antifungal 39 129 IPR002902 -
Stsc181274g00018 565 Pfam Salt stress response/antifungal 144 236 IPR002902 -
Stsc181274g00018 565 SMART serkin_6 322 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181274g00018 565 FunFam Cysteine-rich receptor-like protein kinase 2 24 131 - -
Stsc181274g00018 565 SUPERFAMILY Protein kinase-like (PK-like) 306 536 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181274g00018 Stsc-Chr181274 97794 100786 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181274g00018 16 487 Receptor kinase-like Gene Family AT1G70530 60.338 0.0 614
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc181274g00018 Pkinase 3.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181274g00018 - - gmx:100787359 779.245