Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181274g00017 ATGGCTCTTCTCCTGCTTCTCTTGTTGTTCTTCTCTTGCTTATCAACTCCTTCACTGTCAGACCCCAGAGCCACCAAGGCAGCCATGCTCTGCACCAACAGAACCGCTCCTACGCCTTCCCGTCAACTCTTCGTATCAAACTTCCTTGCTGCCATGGACGCACTCACCCCTCTCATCTCTGCTAAAAGGTACGGATCATCCATCAACGGGACCCACACCTTGACCGTCTACGCCTTCGGGCAGTGTATGAAGGACCTCTCTCAGCAAGACTGCAACATGTGCTTCGCCCAGTGCAAGACTCAGATCCTCAACTGCCTCCCCTTCCAGAAAGGGACACGTGGCGGCTCCCTCTTCTTCGATGGCTGCTACCTCAGGTATGACGATTATAACTTCTTCAACGAGACCATCACCGATCGAGACACCTCCGTCTGTAACGGCACCAGTAACAAAAACGGCGTCGTTTACAAGGCCAATGCTTTGCAGTTGGTGTCCAACTTGAGTCATCTGGCGCCCAAGAACGGTGGCTTCTTCGTTGCCTCATTGAGCCGCAAGAATGTCTCTGTTTATGGTTTGGCTCAGTGCTGGGAATATGTTAATGCAACTTCTTGCAGGAACTGTTTGGCTGATGCTGTTACTAGAATCGGTTCTTGTCCTCCCAAACAAGAAGGGAGGGCGCTCAATACTGGTTGTTACTTGAGGTATTCCTCTCAAAAGTTTTATGACAATTCAACCGTTGTGGCTTCTTCTTCTGGGAATCATGGACGTCGCAAACTAGCTATAATTCTGGCCGCATCTTTTGCTGCCCTGGCTCTTGTTCTGGCTGCTGCAACATTTGCTTTCTTTGCAAGGAAGAATCTACTCAAGAGGAGGAGAGATAGAAGACAGTTTGGTGCTATATTGGATACAGTGAACAAGTCCAAGCTAAACATGGCATATGAAATCCTTGAAAAAGCAACAAATTACTTTAATGATGACAATAAGCTAGGACAAGGTGGATCAGGCTCAGTTTATAAAGGAGTTCTGCCTGATGGAAATGTTGTGGCCATAAAAAGGCTTAGCTTTAACACAACGCAATGGGCAGATCATTTCTTTAATGAGGTCAATTTGATAAGCGGCATTCATCACAAGAATCTTGTAAGGCTTTTGGGATGCAGCATTACCGGACCTGAAAGCCTTTTGGTTTATGAATATGTGCCTAACAAGAGTCTCCATGATCACCTTTCAGCTAGGAGAATTTTGCAGCCGTTGACTTGGGAAGTAAGGTATAAGATCATATTAGGAATTGCTGAGGGCATGGCCTATCTTCATGAGGAGTCACATGTCAGAATCATTCATAGAGACATAAAATTAAGCAACATTCTGCTAGACAATGACTTCACACCCAAGATTGCGGATTTTGGACTTGCCAGATTGTTTCCAGAAGATAAGTCTCACATTAGCACAGCCATTGCTGGCACACTTGGTTACATGGCTCCTGAATATGTAGTTCGTGGTAAGTTGACTGAGAAAGCAGATGTTTTCAGTTTTGGAGTTCTAGTTGTTGAAATTGTTTCTGGCAGAAAGAACACCTCCTTCATCACAAGTTCATCCTCTATCTTACAGACGTTGTGGAGCCTTTTCGGATCAAATAGGCTACCTGAAATTGTTGATCCAGCCCTAGAGGGTAACTTTCCTTCAGAGGAAGCATGCAGACTGTTGCAGATAGGGTTGCTTTGCGCGCAAGCAACTGCAGAGCTGAGACCAGCAATGTCAGCAGTTGTTCAAATGATTAACAACAGCCACGAAATTCCTCAGCCGACACAACCGCCGTTTCTTAGTTCGAGTTCTTCAGATATCAGCAAATCAAGTTTGCCTGGATATAATTTTCAGCCAGGATCCATGACTCAGTCTTCAGGGGACAGCATGACAGAGAGTCTTATTTTGCCTAGATGA 1932 0.456 MALLLLLLLFFSCLSTPSLSDPRATKAAMLCTNRTAPTPSRQLFVSNFLAAMDALTPLISAKRYGSSINGTHTLTVYAFGQCMKDLSQQDCNMCFAQCKTQILNCLPFQKGTRGGSLFFDGCYLRYDDYNFFNETITDRDTSVCNGTSNKNGVVYKANALQLVSNLSHLAPKNGGFFVASLSRKNVSVYGLAQCWEYVNATSCRNCLADAVTRIGSCPPKQEGRALNTGCYLRYSSQKFYDNSTVVASSSGNHGRRKLAIILAASFAALALVLAAATFAFFARKNLLKRRRDRRQFGAILDTVNKSKLNMAYEILEKATNYFNDDNKLGQGGSGSVYKGVLPDGNVVAIKRLSFNTTQWADHFFNEVNLISGIHHKNLVRLLGCSITGPESLLVYEYVPNKSLHDHLSARRILQPLTWEVRYKIILGIAEGMAYLHEESHVRIIHRDIKLSNILLDNDFTPKIADFGLARLFPEDKSHISTAIAGTLGYMAPEYVVRGKLTEKADVFSFGVLVVEIVSGRKNTSFITSSSSILQTLWSLFGSNRLPEIVDPALEGNFPSEEACRLLQIGLLCAQATAELRPAMSAVVQMINNSHEIPQPTQPPFLSSSSSDISKSSLPGYNFQPGSMTQSSGDSMTESLILPR 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181274g00017 643 ProSiteProfiles Gnk2-homologous domain profile. 25 131 IPR002902 -
Stsc181274g00017 643 CDD STKc_IRAK 328 592 - -
Stsc181274g00017 643 Pfam Salt stress response/antifungal 144 236 IPR002902 -
Stsc181274g00017 643 Pfam Salt stress response/antifungal 39 129 IPR002902 -
Stsc181274g00017 643 SMART serkin_6 322 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181274g00017 643 MobiDBLite consensus disorder prediction 597 643 - -
Stsc181274g00017 643 FunFam Cysteine-rich receptor-like protein kinase 2 398 598 - -
Stsc181274g00017 643 Gene3D Phosphorylase Kinase; domain 1 282 397 - -
Stsc181274g00017 643 ProSiteProfiles Protein kinase domain profile. 322 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181274g00017 643 FunFam Cysteine-rich receptor-like protein kinase 2 24 131 - -
Stsc181274g00017 643 ProSitePatterns Serine/Threonine protein kinases active-site signature. 443 455 IPR008271 GO:0004672|GO:0006468
Stsc181274g00017 643 MobiDBLite consensus disorder prediction 597 637 - -
Stsc181274g00017 643 FunFam Putative DUF26-domain receptor-like protein kinase family protein 282 397 - -
Stsc181274g00017 643 ProSiteProfiles Gnk2-homologous domain profile. 137 239 IPR002902 -
Stsc181274g00017 643 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 77 623 - -
Stsc181274g00017 643 Gene3D Transferase(Phosphotransferase) domain 1 398 601 - -
Stsc181274g00017 643 Pfam Protein kinase domain 323 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181274g00017 643 ProSitePatterns Protein kinases ATP-binding region signature. 328 350 IPR017441 GO:0005524
Stsc181274g00017 643 SUPERFAMILY Protein kinase-like (PK-like) 310 624 IPR011009 -
Stsc181274g00017 643 FunFam Cysteine-rich receptor-like protein kinase 3 140 239 - -
Stsc181274g00017 643 Gene3D - 138 239 IPR038408 -
Stsc181274g00017 643 Gene3D - 24 131 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181274g00017 Stsc-Chr181274 97794 100786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181274g00017 16 487 Receptor kinase-like Gene Family AT1G70530 60.338 0.0 617
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc181274g00017 Pkinase 2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181274g00017 - - gmx:100787359 919.457