Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181274g00016 ATGAAAGTCCCAACAATGGAGAAGAAACTAGTCTCTCTTGTTTTCCTCCTCATCAAATCTCTGTTACTGTTAGATTCAGTGGTAGCAGAACCAAGGGCCAAAACAATTGAAGTAACATGTGGGAATCAACTAGAGCACAACGCTACCATCTTTGTTCCAAATTTCATTGCAACCATGGTGAAGATAAGCCAACAAATGAGCAGCAGCGGCTATGGCACAGCAGTTACAGGGACAGGACCAGACATAAACTATGGCTTGGCACAGTGCTATGGAGATCTTTCACTTCTTGATTGTGTGTTATGTTATGCCGAGGCACGAACCGTTCTTCCTAAATGCTTCCCATACAATAGTGGCCGCATATTTCTTGATGGATGCTTCATGAGGTCTGAAAACTATAGCTTCTTTGATGAGTATGCAGGGCCTGGGGACAAGGCTGTTTGTGGTAACACAACAAGGAAGAACTCGAGTTTTCAAGCAGCCGCGAAACAAGCGGTTTTGGAAGTAGTTCAAGCTGCACCAAACAACAAGGGATACTATGCAAGAGGGAAGGTTGATGTTTCTGGAAGTGTAAATGAATCTGCTTATGTTTTGGCTAATTGTTGGAGGAGTTTGAACACAAGTTCTTGCAAAGCATGCCTTGAGAATGCTTCTAAATCTGTTTTGGGATGCTTGCCTTATTCAGAAGGTAGAGCACTGAATACTGGTTGCTTCATGAGGTACTCTGACACAGATTTTCTTAACAAGGAACAGAATAATGGAAGATCAAGAGGCACTCTTATAGCGATAGTGGTAGCAGTAGTTAGTGCAGTGATTGTTTTGGTAGTTGGAATAGCTATTGGGGTCTATATAAGGAAACATAGATACATTCAAAGAAAAAGAAGAGGTTCAAATGATGCAGAAAAGTTGGCTAAGACACTTCACCACAACAGCTTGAATTTCAAATACTCTACACTGGAGAAGGCTACAGAATCCTTCAGCGAAGCAAACAAGCTTGGACAAGGAGGATTCGGATCGGTTTATAGAGGTGTTCTGCCTGATGGAAGAGAAATTGCCATCAAGAGGTTGTACTTCAACAACAGGCATAGAGCAGCAGATTTCTACAATGAAGTCAACATAATTAGTAGCGTGGAGCACAAGAATCTAGTGAGGTTGTTAGGATGCAGCTGTTCTGGACCTGAAAGCTTGCTCGTTTATGAATTTCTACCCAACAAAAGTCTTGATCAATTTATTTTTGATAGTGTCAAGGGAAGAGAACTAAACTGGGAGAAGAGATATGACATTATCATTGGGACAGCTGAAGGATTGGTTTACCTGCATGAGAACTCAAAAACTAGGATAATTCATAGAGATATAAAAGCCAGCAACATCTTATTGGATGCTAAACTTCGCGCCAAGATTGCAGATTTCGGACTGGCCAGATCCTTTCAAGAAGATAAGAGTCACATTAGCACGGCCATAGCCGGAACTCTTTTTGGAGTGTTAGTCCTAGAAATAGTTACTGGGAGACAGAATAACAGAAGCAAATCAACAGAATACACAGACAGCATAGTTATACTGACATGGAGGCATTTCCAATCAGGGACAGCAGAAGAACTATTTGATCCAAATCTAGTAGTTTCAGATGACAACAACAACAATGATGATGATAATGTTAACAAGAAGGATGAGATTTTGAGAGTGGTGCAAATAGGACTTCTATGCACACAAGAGAACCCTTCCTTAAGGCCAACCATGTCAAGGGCACTACAGATGCTAACAAAGAAGGAGGAGAATCTTGCACGTCCCTCAAATCCACCCTTCACAGATGAGAGCACAATGGAACTCAATGACACTGTTGATAACCCATTTTCCCCTCTCAATAATGCAACATATTCATCAGATGCTACTATGTCCCATAGTTCTTTCTATGCAAGGTGA 1917 0.4131 MKVPTMEKKLVSLVFLLIKSLLLLDSVVAEPRAKTIEVTCGNQLEHNATIFVPNFIATMVKISQQMSSSGYGTAVTGTGPDINYGLAQCYGDLSLLDCVLCYAEARTVLPKCFPYNSGRIFLDGCFMRSENYSFFDEYAGPGDKAVCGNTTRKNSSFQAAAKQAVLEVVQAAPNNKGYYARGKVDVSGSVNESAYVLANCWRSLNTSSCKACLENASKSVLGCLPYSEGRALNTGCFMRYSDTDFLNKEQNNGRSRGTLIAIVVAVVSAVIVLVVGIAIGVYIRKHRYIQRKRRGSNDAEKLAKTLHHNSLNFKYSTLEKATESFSEANKLGQGGFGSVYRGVLPDGREIAIKRLYFNNRHRAADFYNEVNIISSVEHKNLVRLLGCSCSGPESLLVYEFLPNKSLDQFIFDSVKGRELNWEKRYDIIIGTAEGLVYLHENSKTRIIHRDIKASNILLDAKLRAKIADFGLARSFQEDKSHISTAIAGTLFGVLVLEIVTGRQNNRSKSTEYTDSIVILTWRHFQSGTAEELFDPNLVVSDDNNNNDDDNVNKKDEILRVVQIGLLCTQENPSLRPTMSRALQMLTKKEENLARPSNPPFTDESTMELNDTVDNPFSPLNNATYSSDATMSHSSFYAR 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181274g00016 638 Gene3D Transferase(Phosphotransferase) domain 1 491 596 - -
Stsc181274g00016 638 Gene3D Transferase(Phosphotransferase) domain 1 401 490 - -
Stsc181274g00016 638 FunFam Cysteine-rich receptor-like protein kinase 2 33 134 - -
Stsc181274g00016 638 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 491 613 - -
Stsc181274g00016 638 SMART serkin_6 325 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181274g00016 638 FunFam Cysteine-rich receptor-like protein kinase 3 143 245 - -
Stsc181274g00016 638 Pfam Salt stress response/antifungal 147 242 IPR002902 -
Stsc181274g00016 638 Pfam Salt stress response/antifungal 51 132 IPR002902 -
Stsc181274g00016 638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 446 458 IPR008271 GO:0004672|GO:0006468
Stsc181274g00016 638 ProSiteProfiles Protein kinase domain profile. 325 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181274g00016 638 Gene3D Phosphorylase Kinase; domain 1 285 400 - -
Stsc181274g00016 638 FunFam Os07g0541700 protein 401 489 - -
Stsc181274g00016 638 ProSiteProfiles Gnk2-homologous domain profile. 139 245 IPR002902 -
Stsc181274g00016 638 FunFam Putative DUF26-domain receptor-like protein kinase family protein 293 400 - -
Stsc181274g00016 638 Gene3D - 144 245 IPR038408 -
Stsc181274g00016 638 Gene3D - 33 134 IPR038408 -
Stsc181274g00016 638 ProSiteProfiles Gnk2-homologous domain profile. 33 134 IPR002902 -
Stsc181274g00016 638 SUPERFAMILY Protein kinase-like (PK-like) 309 608 IPR011009 -
Stsc181274g00016 638 Pfam Protein tyrosine and serine/threonine kinase 328 583 IPR001245 GO:0004672|GO:0006468
Stsc181274g00016 638 ProSitePatterns Protein kinases ATP-binding region signature. 331 353 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181274g00016 Stsc-Chr181274 93107 96155 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181274g00016 6 638 Receptor kinase-like Gene Family AT1G70520 63.485 0.0 813
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc181274g00016 PK_Tyr_Ser-Thr 2e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181274g00016 - - aip:107631343 1128.62