Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181274g00014 ATGCAATCATTGGAGATTGAGTTGTGGAGTGAAAGCTTCTTATTAATCATTCAACACACAAAATGGGTGAACTGTGGAGGCATGGACATTGAGCTAAGGAGCAAAGAAGCTTCAAGGTTACAAAACCATAACAATTTTACCTACAAGCTTCCGTCCATGGAGGACGAAATGTACGGAGTTCCGCCATCATCGACCACGGTGTACTCAGACAGGGCGCCGTTGACGCCGGACAACATAATATTCCCGGTTGAGTACCATAGCTTTCTCATGTCCACCGGCGCCCGGATTCCTATGTTCGGATCCGACGAGCTTCTCTCGGCTGCGGCCTCCGCCGTAACGGCCATCACAGAAGCGGAACCCTCCTGCAACGTGATGGTGCCCGAAATCCTTGAGCGGCAGCAGCAGGAGGCTGCTTCTTGCTCTCACATGAAGGCGAAAATCGCTTCTCACCCTTACTACCCTCGCCTCCTCCAAGCCTACATCGATTGCCAGAAGGTGGGAGCACCTCCAGAGATAGCAAGGTTGTTAGAGGAAATACAGCGAGAAAACGACGTTTGCAAGGGGGACGTGAGTTCCACGTGCATAGGAGCCGATCCCGAGCTGGACGAGTTTATGGAAACATACTGTGAGATGCTGGTGAAGTATAAGTGCGATCTGAGTCGGCCTTTCGAAGAAGCGAGTAGCTTCCTCAGCAAGATCGAAACGCAGCTCAGCGATCTCTGCTGCACAGGTGCTTCCGCTCCAGCACCACTTTCCGATGATGATGGGGGTGCATCATCGGAGGAATATTTAAGTGGTGGTGGAGATGCTGAATTTCAAGAGGGACAATCGCAATCACGGGTTGAAGATCGCGATCTTAAGGATAAGCTCTTACGCAAATTTGGTAGTCACATTAGTTCATTGAAATTGGAGTTCTCAAAGAAGAAAAAAAGGGGCAAGCTACCCAAAGACGCTAGGCAAAGTCTCCTTCACTGGTGGAATAATCATTACAAATGGCCTTATCCAACGGAAGCTGACAAGGTAGCACTGGCGAAGTCAACAGGCCTAGATCAGAAGCAAATTAACAACTGGTTTATTAATCAAAGAAAGCGTCATTGGAAACCATCAGAGAACATGCAGTTTAATTTCTACGATGGATAA 1140 0.486 MQSLEIELWSESFLLIIQHTKWVNCGGMDIELRSKEASRLQNHNNFTYKLPSMEDEMYGVPPSSTTVYSDRAPLTPDNIIFPVEYHSFLMSTGARIPMFGSDELLSAAASAVTAITEAEPSCNVMVPEILERQQQEAASCSHMKAKIASHPYYPRLLQAYIDCQKVGAPPEIARLLEEIQRENDVCKGDVSSTCIGADPELDEFMETYCEMLVKYKCDLSRPFEEASSFLSKIETQLSDLCCTGASAPAPLSDDDGGASSEEYLSGGGDAEFQEGQSQSRVEDRDLKDKLLRKFGSHISSLKLEFSKKKKRGKLPKDARQSLLHWWNNHYKWPYPTEADKVALAKSTGLDQKQINNWFINQRKRHWKPSENMQFNFYDG 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181274g00014 379 Pfam ELK domain 285 306 IPR005539 GO:0003677
Stsc181274g00014 379 ProSiteProfiles ELK domain profile. 285 305 IPR005539 GO:0003677
Stsc181274g00014 379 SMART KNOX2_2 191 242 IPR005541 GO:0003677|GO:0005634
Stsc181274g00014 379 SMART ELK_2 285 306 IPR005539 GO:0003677
Stsc181274g00014 379 SMART HOX_1 307 372 IPR001356 GO:0003677
Stsc181274g00014 379 MobiDBLite consensus disorder prediction 248 283 - -
Stsc181274g00014 379 SMART KNOX1_2 141 185 IPR005540 GO:0003677|GO:0005634
Stsc181274g00014 379 Pfam KNOX1 domain 143 184 IPR005540 GO:0003677|GO:0005634
Stsc181274g00014 379 Pfam Homeobox KN domain 325 364 IPR008422 GO:0003677|GO:0006355
Stsc181274g00014 379 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 130 374 - -
Stsc181274g00014 379 CDD homeodomain 317 369 IPR001356 GO:0003677
Stsc181274g00014 379 Gene3D - 310 371 - -
Stsc181274g00014 379 ProSiteProfiles 'Homeobox' domain profile. 305 368 IPR001356 GO:0003677
Stsc181274g00014 379 ProSitePatterns 'Homeobox' domain signature. 343 366 IPR017970 GO:0000981|GO:0006355
Stsc181274g00014 379 Pfam KNOX2 domain 194 241 IPR005541 GO:0003677|GO:0005634
Stsc181274g00014 379 SUPERFAMILY Homeodomain-like 306 375 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181274g00014 Stsc-Chr181274 78428 92280 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181274g00014 55 378 Homeobox Transcription Factor Family AT1G23380 61.747 3.36e-124 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Stsc181274g00014 KNOX2 5.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181274g00014 - - adu:107481351 593.578