LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc181274g00012	ATGGAACATAGTAGTTCAGTTTCATGGCTACTTGGTTTACTTCTTTTAGCTATGGTGGAAATGTCTTCTTCTACTCTTTCTCCTTCAGGGATAAATTATGAAGTTGTAGCTCTGATGGCCATTAAGAATGACTTGAATGATCCCCACAATGTCCTTGAGAATTGGGATATCAATTCTGTTGATCCTTGTAGCTGGAGAATGATTACCTGTTCTCTAGATGGTTCTGTTTCTGCATTGGGATTGCCTAGTCAGAACTTATCTGGTACACTTTCTCCAGGGATTCAAAACCTTACTAACTTGCAATCAGTGTTGCTTCAGAACAATGCTATTTCCGGTCAAATTCCTGCTGCAATTGGAAAGCTAAAGAAGCTTGAGACACTTGACCTATCCAATAATGCATTTATTGGTGAGATACCAAGTTCTTTGGGAGGCCTCACAAGCCTGAACTACTTGCGGTTGAACAATAACAGCCTTACCGGAGCATGCCCTCAGTCTCTTAGTAATATTGAAGGTCTAACACTTGTGGACCTCTCTTATAACAATCTGAGTGGTTCTTTGCCAAGAGTAACAGCAAGAACATTCAAGATTGAGGGTAACCCATTAATATGTGGGCCAAAAGCAAATAACTGCTCTAATGTGTTGCCTGAACCACTTTCCTTCCCTCCAGATGCTCTAACAGCTCAATCCGACTCTAGCGCAAAAAGCCATCGTGTTGCAATTGCTTTTGGAGCAAGTTTCGGTTCAGCTTTTATCATTGTAACTGTTGTTGTGGTTCTCATTTGGTGGCGATACAGACAAAATAAGCAGATATTCTTTGATGTTAGCGAGCAATACGACCCCGAGGTGCGCCTTGGTCATTTGAAGAGGTATTCATTCAAAGAGCTGAGAGCCGCAACAGACCATTTCAGTTCAAAGAATATTCTAGGAAAGGGTGGCTTTGGAATAGTCTACAAGGGGTGCTTGAATGATGGATCAACTGTGGCAGTTAAAAGGTTGAAGGATTACAATGCTGCTGGTGGTGAGATCCAATTTCAGACAGAGGTTGAGACCATAAGTTTGGCTGTGCACCGAAATCTTCTGCGCCTCAGTGGATTTTGCAGTACTCAGAATGAAAGGCTCCTCGTTTATCCCTATATGTCCAATGGCAGTGTAGCCTCTAAATTAAAAGATCATGTTCATGGTCAGCCAGCCTTAGATTGGGTGAGACGGAAGAGAATAGCCATAGGTACAGCAAGGGGATTGGTTTATTTGCATGAACAATGTGATCCGAAGATTATTCATCGTGATGTCAAAGCAGCCAATATATTGCTAGATGAAGATTTCGAAGCAGTTGTTGGCGATTTTGGTTTGGCTAAGCTTCTGGATCACAGAGATACTCATGTGACAACTGCTGTCCGTGGAACTGTTGGCCATATTGCTCCGGAGTATCTATCAACAGGTCAGTCATCAGAGAAGACTGATGTGTTTGGGTTTGGAATCTTGCTGCTTGAGCTAATCACAGGCCATAAGGCTCTAGATTTCGGGCGAGCCGCAAACCAGAAAGGCATCATGCTTGATTGGGTTAAGAAGCTCCACCAAGATGGAAGATTAAGCCAAATGGTGGACAAAGATCTAAAGGGAAAATTTGATTTGGTTGAGTTGGAAGAGATGGTTCAGGTAGCACTACTCTGCACACAATTCAACCCTTCACATCGTCCGAAGATGTCAGAAGTATTGAAGATGTTGGAAGGTGATGGATTAGCTGAGAGGTGGGAGGCCTCACAGTCACAGAAGATTGAAACACCAAGGCTCCGATCTAGTAATAGTGAAAGTAACCCTCAAAGATATTCAGATTTCATAGAAGAATCTTCACTCATATTAGAAGCTATGGAGCTTTCTGGCCCTAGGTGA	1890	0.427	MEHSSSVSWLLGLLLLAMVEMSSSTLSPSGINYEVVALMAIKNDLNDPHNVLENWDINSVDPCSWRMITCSLDGSVSALGLPSQNLSGTLSPGIQNLTNLQSVLLQNNAISGQIPAAIGKLKKLETLDLSNNAFIGEIPSSLGGLTSLNYLRLNNNSLTGACPQSLSNIEGLTLVDLSYNNLSGSLPRVTARTFKIEGNPLICGPKANNCSNVLPEPLSFPPDALTAQSDSSAKSHRVAIAFGASFGSAFIIVTVVVVLIWWRYRQNKQIFFDVSEQYDPEVRLGHLKRYSFKELRAATDHFSSKNILGKGGFGIVYKGCLNDGSTVAVKRLKDYNAAGGEIQFQTEVETISLAVHRNLLRLSGFCSTQNERLLVYPYMSNGSVASKLKDHVHGQPALDWVRRKRIAIGTARGLVYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRDTHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGHKALDFGRAANQKGIMLDWVKKLHQDGRLSQMVDKDLKGKFDLVELEEMVQVALLCTQFNPSHRPKMSEVLKMLEGDGLAERWEASQSQKIETPRLRSSNSESNPQRYSDFIEESSLILEAMELSGPR	629

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc181274g00012	629	FunFam	Somatic embryogenesis receptor kinase 1	271	378	-	-
	Stsc181274g00012	629	Pfam	Leucine rich repeat N-terminal domain	32	71	IPR013210	-
	Stsc181274g00012	629	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	31	212	-	-
	Stsc181274g00012	629	Pfam	Protein kinase domain	303	573	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc181274g00012	629	Gene3D	Ribonuclease Inhibitor	31	212	IPR032675	-
	Stsc181274g00012	629	ProSiteProfiles	Protein kinase domain profile.	302	585	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc181274g00012	629	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	425	437	IPR008271	GO:0004672\|GO:0006468
	Stsc181274g00012	629	SUPERFAMILY	Protein kinase-like (PK-like)	279	576	IPR011009	-
	Stsc181274g00012	629	SMART	serkin_6	302	575	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc181274g00012	629	MobiDBLite	consensus disorder prediction	587	610	-	-
	Stsc181274g00012	629	SUPERFAMILY	L domain-like	32	198	-	-
	Stsc181274g00012	629	PANTHER	SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1	13	586	-	-
	Stsc181274g00012	629	FunFam	Somatic embryogenesis receptor-like kinase 1	379	595	-	-
	Stsc181274g00012	629	Gene3D	Phosphorylase Kinase; domain 1	271	378	-	-
	Stsc181274g00012	629	ProSitePatterns	Protein kinases ATP-binding region signature.	308	330	IPR017441	GO:0005524
	Stsc181274g00012	629	Pfam	Leucine rich repeat	98	158	IPR001611	GO:0005515
	Stsc181274g00012	629	Gene3D	Transferase(Phosphotransferase) domain 1	379	595	-	-
	Stsc181274g00012	629	MobiDBLite	consensus disorder prediction	586	610	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc181274g00012	Stsc-Chr181274	60255	63807	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc181274g00012	67	629	Receptor kinase-like Gene Family	AT1G60800	75.528	0.0	828

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-II	Stsc181274g00012		Pkinase	1.4e-43	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc181274g00012	-		-	gmx:100806943	1098.57