Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181274g00006 ATGTTGGGGCACAAAAATGTGTTGGATGAGGCTCAATTTCAGTATGAAACCAATGAAGAAAATCAACTGCAGTTGTTGGGGAATATACAAGCTGGACGCAATATTGATCCTGTTAATCACTTTGGAAATGAGTATCTCAGCTCCATGTTTCAGTCTAATAAACGAAGCAGAGAAGCACAAGATATATTGAAGCAGCACAATGTCTGTCAGGATGAAGCTGATCCAACTGCAAACATTCCAAATCCAAATCAAGTGTCAACAGGATTGAGGCTTTCTTATGACGATGATGAGCGCAATTCTTCTGTTACTTCTGCTAGTGGTAGCATGACTGCCACACCTTCACTCGTATTGCCCTTTAGTGACAATTTCAGAACCGAGCTTGATAGGCAGCAACAAGAGCTGGACCAGTATATTCAGCAACAGAAGGATCAATTGTCAAAAGCAGTGAGAGATATGAAACAGAAACACATGACCTCTCTCTTTTATGCCATTGAGAAAGGTGTTAGCAAGAAGCTAAGGGAAAAAGATGCAGAGATAGAGAACATTAACCAGAAAAACAAGGAACTAGCAGAGAGAATAAAACAAGTATCCATCGAAGCACAAAGCTGGCACTACAAAGCAAAGTATAATGAACAAGTTGTAAATGTATTAAGGAGCAATCTCCAACAAGCAATTACACAAGGAGTCGAACAAGGAAAGGAAGGGTTCGGAGACAGTAGTGAAGTTGATGATGCCACCTCATATATTGATTTGAATAACTTGATCAGCATTCCAGGTGCACAAATAAAATCTAGTTTGAAGAACCAGCAATGCACAGAGAATCTGACGTGCAGAGTGTGCAAGGCGAAGAAGGTTTCCATGTTGTTGATGCCTTGCAGACACTTATGCTTGTGTGACAACTGTGATAGATATATCAATGTTTGTCCTGTATGCCAATTGATGAAAACTCAAAGTATCCAGGTTTATCTGTCTTAA 975 0.399 MLGHKNVLDEAQFQYETNEENQLQLLGNIQAGRNIDPVNHFGNEYLSSMFQSNKRSREAQDILKQHNVCQDEADPTANIPNPNQVSTGLRLSYDDDERNSSVTSASGSMTATPSLVLPFSDNFRTELDRQQQELDQYIQQQKDQLSKAVRDMKQKHMTSLFYAIEKGVSKKLREKDAEIENINQKNKELAERIKQVSIEAQSWHYKAKYNEQVVNVLRSNLQQAITQGVEQGKEGFGDSSEVDDATSYIDLNNLISIPGAQIKSSLKNQQCTENLTCRVCKAKKVSMLLMPCRHLCLCDNCDRYINVCPVCQLMKTQSIQVYLS 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181274g00006 324 Pfam Zinc finger, C3HC4 type (RING finger) 274 312 - -
Stsc181274g00006 324 MobiDBLite consensus disorder prediction 71 113 - -
Stsc181274g00006 324 MobiDBLite consensus disorder prediction 71 90 - -
Stsc181274g00006 324 Coils Coil 120 147 - -
Stsc181274g00006 324 PIRSF SBP1_RNase_bind 3 324 IPR017066 -
Stsc181274g00006 324 Coils Coil 172 199 - -
Stsc181274g00006 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 259 324 IPR013083 -
Stsc181274g00006 324 ProSiteProfiles Zinc finger RING-type profile. 277 312 IPR001841 -
Stsc181274g00006 324 MobiDBLite consensus disorder prediction 98 113 - -
Stsc181274g00006 324 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 42 321 IPR017066 -
Stsc181274g00006 324 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 259 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181274g00006 Stsc-Chr181274 26589 28885 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181274g00006 273 322 C3H Transcription Factor Family AT1G73950 40.000 1.14e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181274g00006 K19042 - gmx:100791550 457.988