Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc181272g00033 | ATGAAATACATGATTCTCAACGAAGTCTTCTTTTCTGTTTGCAGGAGAAGTGTCTCAAACCTCCTTCGTAGCAGCTTTCGTGAGAGCCTTGATCAGTTGATACAATCATACGTTGAAAGGCAGAGTCATGCTAACGTTGAGTGGGAGCTGCAAGAAGCAACAACCCCTTCCTCTCCCTCAGCAGAACAAGGCCTTGAGCAGCAGAACAGGGATCCAATTGTTGATACTCAGAATGCTGTTAATAGCTCACTTCGTCGTCAACCCTTGCCACCGCCACCTCCACCAGCGCCTATATGGGATCGCCGCCCAGCGCCTATATGGGATCGTCGCTCGCGTCATGACAGATGGTCACATCATGATATAAATAATCAACGCCTAGGAATGGAATGGGATGTCATTAATGACTTGAGAGTTGACATGGTTAGGCTACAGCAAAGAATGAACAATATGCAGAGAATGTTGGAGACCTGCATGGATATGCAGCTTGAGTTGCAACGCTCAATAAGACAAGAGGTTTCTGCGGCCCTAAATCGCTCAACTGGTTCATCAGGAACACGTAACCATGATTCACCAGATGATACATCCAGATGGGAATGCGTGAGGAAAGGGCTTTGCTGCATTTGCTGCGAAAGCAACATTGATTCTCTGTTGTACAGATGTGGGCACATGTGCACATGTTCTAACTGTGCTAATGATTTGCACCGAAGTGGAAGGAAGTGTCCAATGTGTCAAGCACCAGTTGTGGAAGTAATTCGTGCTTATTCCATACTATAG | 774 | 0.4625 | MKYMILNEVFFSVCRRSVSNLLRSSFRESLDQLIQSYVERQSHANVEWELQEATTPSSPSAEQGLEQQNRDPIVDTQNAVNSSLRRQPLPPPPPPAPIWDRRPAPIWDRRSRHDRWSHHDINNQRLGMEWDVINDLRVDMVRLQQRMNNMQRMLETCMDMQLELQRSIRQEVSAALNRSTGSSGTRNHDSPDDTSRWECVRKGLCCICCESNIDSLLYRCGHMCTCSNCANDLHRSGRKCPMCQAPVVEVIRAYSIL | 257 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc181272g00033 | 257 | Pfam | Zinc finger, C3HC4 type (RING finger) | 202 | 249 | - | - | |
| Stsc181272g00033 | 257 | MobiDBLite | consensus disorder prediction | 174 | 193 | - | - | |
| Stsc181272g00033 | 257 | MobiDBLite | consensus disorder prediction | 174 | 188 | - | - | |
| Stsc181272g00033 | 257 | CDD | mRING-HC-C3HC5_NEU1 | 205 | 254 | - | - | |
| Stsc181272g00033 | 257 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 15 | 257 | - | - | |
| Stsc181272g00033 | 257 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 182 | 255 | IPR013083 | - | |
| Stsc181272g00033 | 257 | MobiDBLite | consensus disorder prediction | 86 | 101 | - | - | |
| Stsc181272g00033 | 257 | SUPERFAMILY | RING/U-box | 204 | 250 | - | - | |
| Stsc181272g00033 | 257 | ProSiteProfiles | Zinc finger RING-type profile. | 205 | 244 | IPR001841 | - | |
| Stsc181272g00033 | 257 | Coils | Coil | 133 | 160 | - | - | |
| Stsc181272g00033 | 257 | MobiDBLite | consensus disorder prediction | 81 | 103 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc181272g00033 | Stsc-Chr181272 | 216339 | 217813 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc181272g00033 | 163 | 252 | C3H Transcription Factor Family | AT3G06140 | 30.000 | 1.31e-06 | 47.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc181272g00033 | - | - | gmx:100804887 | 374.4 |