Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181272g00033 ATGAAATACATGATTCTCAACGAAGTCTTCTTTTCTGTTTGCAGGAGAAGTGTCTCAAACCTCCTTCGTAGCAGCTTTCGTGAGAGCCTTGATCAGTTGATACAATCATACGTTGAAAGGCAGAGTCATGCTAACGTTGAGTGGGAGCTGCAAGAAGCAACAACCCCTTCCTCTCCCTCAGCAGAACAAGGCCTTGAGCAGCAGAACAGGGATCCAATTGTTGATACTCAGAATGCTGTTAATAGCTCACTTCGTCGTCAACCCTTGCCACCGCCACCTCCACCAGCGCCTATATGGGATCGCCGCCCAGCGCCTATATGGGATCGTCGCTCGCGTCATGACAGATGGTCACATCATGATATAAATAATCAACGCCTAGGAATGGAATGGGATGTCATTAATGACTTGAGAGTTGACATGGTTAGGCTACAGCAAAGAATGAACAATATGCAGAGAATGTTGGAGACCTGCATGGATATGCAGCTTGAGTTGCAACGCTCAATAAGACAAGAGGTTTCTGCGGCCCTAAATCGCTCAACTGGTTCATCAGGAACACGTAACCATGATTCACCAGATGATACATCCAGATGGGAATGCGTGAGGAAAGGGCTTTGCTGCATTTGCTGCGAAAGCAACATTGATTCTCTGTTGTACAGATGTGGGCACATGTGCACATGTTCTAACTGTGCTAATGATTTGCACCGAAGTGGAAGGAAGTGTCCAATGTGTCAAGCACCAGTTGTGGAAGTAATTCGTGCTTATTCCATACTATAG 774 0.4625 MKYMILNEVFFSVCRRSVSNLLRSSFRESLDQLIQSYVERQSHANVEWELQEATTPSSPSAEQGLEQQNRDPIVDTQNAVNSSLRRQPLPPPPPPAPIWDRRPAPIWDRRSRHDRWSHHDINNQRLGMEWDVINDLRVDMVRLQQRMNNMQRMLETCMDMQLELQRSIRQEVSAALNRSTGSSGTRNHDSPDDTSRWECVRKGLCCICCESNIDSLLYRCGHMCTCSNCANDLHRSGRKCPMCQAPVVEVIRAYSIL 257
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc181272g00033 257 Pfam Zinc finger, C3HC4 type (RING finger) 202 249 - -
Stsc181272g00033 257 MobiDBLite consensus disorder prediction 174 193 - -
Stsc181272g00033 257 MobiDBLite consensus disorder prediction 174 188 - -
Stsc181272g00033 257 CDD mRING-HC-C3HC5_NEU1 205 254 - -
Stsc181272g00033 257 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 15 257 - -
Stsc181272g00033 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 182 255 IPR013083 -
Stsc181272g00033 257 MobiDBLite consensus disorder prediction 86 101 - -
Stsc181272g00033 257 SUPERFAMILY RING/U-box 204 250 - -
Stsc181272g00033 257 ProSiteProfiles Zinc finger RING-type profile. 205 244 IPR001841 -
Stsc181272g00033 257 Coils Coil 133 160 - -
Stsc181272g00033 257 MobiDBLite consensus disorder prediction 81 103 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc181272g00033 Stsc-Chr181272 216339 217813 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181272g00033 163 252 C3H Transcription Factor Family AT3G06140 30.000 1.31e-06 47.0
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181272g00033 - - gmx:100804887 374.4