Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181272g00031 ATGACGACTCGAATAGCGCCTGGTGTCGGCGCCAACTTGCTCGGCCAACACTCCGCCGAGAGGAATCAAGACGCCACCGCCTATGTCGGCAATCTCGACCCTCAAGTCCCCGAAGAGTTGCTCTGGGAGCTTTTCGTTCAGGCTGGCCCCGTAGTTAATGTGTACGTTCCCAAGGACAGAGTCACCAACCAGCACCAGGGATATGGATTTGTTGAATTCCGTAGTGAAGAAGATGCTGACTATGCCATCAAGGTGCTTAATATGATTAAGCTTTACGGGAAGCCAATTCGTGTAAATAAGGCAACCCAAGATAAAAAGAGTTTGGACGTGGGGGCAAACCTTTTCATTGGCAACCTTGATCCGGATGTAGATGAGAAGCTCTTATATGATACTTTCAGTGCATTTGGAGTTATTGTTACTAATCCAAAGATTATGAGAGATCCTGATACTGGAAATTCCCGCGGTTTTGGCTTTATTAGCTATGATTCATTTGAGGCATCTGATTCTGCCATTGAGGCAATGAACGGGCAATATCTTTGCAATCGTCAAATTACAGTGTCATATGCTTACAAAAAAGACACTAAAGGGGAAAGGCATGGCACCCCAGCAGAAAGAGTTTTGGCTGCAAGCAATCCCACTGCGCAGAAGAGTAGGCCTCATACGAGATTTGCCAGTGCACCTCCAACACTTGCTAATGTTGCTCAGGCTAATGGCACCGTTCCTGCTCCGGTGCCTCCTCATCCCTTTGCTAATGGGATGGCTCCCCCACCCATTCCTGCCCTCCGACCACCCCCACCACCCCCTCACGCAGCAGCATTTCAGCCTATGCCTGGAGCTGGGCAACCAGCATGGCATCAACAGCAGCCCGGTCTACCACCTGGAATGCCCCCACCTCAGGTCCAGCAGTTCCGGCCACCTCCATCATGTATGCCAATGCCGCCACCTCCACAAGCTGTTTCGGCTCCTCCAAGGCCTCTTCCGCCACCAACTGGAATGGTAAGCCAACCACCTCTTTGGCGACCACAACCGCCGCCCCCGCAGCAACAAGGTGGACGACCTATGGCTTATCCTCAACCCTCAATGCCTCCACCACCTTCCTATAACCAGATGCCGCCACATCAATGA 1125 0.5173 MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVPEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKATQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTRFASAPPTLANVAQANGTVPAPVPPHPFANGMAPPPIPALRPPPPPPHAAAFQPMPGAGQPAWHQQQPGLPPGMPPPQVQQFRPPPSCMPMPPPPQAVSAPPRPLPPPTGMVSQPPLWRPQPPPPQQQGGRPMAYPQPSMPPPPSYNQMPPHQ 374
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc181272g00031 374 MobiDBLite consensus disorder prediction 236 374 - -
Stsc181272g00031 374 CDD RRM1_SF3B4 28 100 IPR034158 -
Stsc181272g00031 374 FunFam splicing factor 3B subunit 4 109 200 - -
Stsc181272g00031 374 CDD RRM2_SF3B4 111 193 IPR034159 -
Stsc181272g00031 374 PANTHER SPLICING FACTOR 3B SUBUNIT 4 14 362 - -
Stsc181272g00031 374 MobiDBLite consensus disorder prediction 289 374 - -
Stsc181272g00031 374 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Stsc181272g00031 374 Gene3D - 16 111 IPR012677 -
Stsc181272g00031 374 MobiDBLite consensus disorder prediction 193 224 - -
Stsc181272g00031 374 FunFam Splicing factor 3b subunit 4 16 108 - -
Stsc181272g00031 374 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Stsc181272g00031 374 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
Stsc181272g00031 374 MobiDBLite consensus disorder prediction 208 224 - -
Stsc181272g00031 374 SUPERFAMILY RNA-binding domain, RBD 25 195 IPR035979 GO:0003676
Stsc181272g00031 374 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Stsc181272g00031 374 SMART rrm1_1 26 99 IPR000504 GO:0003723
Stsc181272g00031 374 SMART rrm1_1 113 187 IPR000504 GO:0003723
Stsc181272g00031 374 MobiDBLite consensus disorder prediction 241 273 - -
Stsc181272g00031 374 Gene3D - 112 200 IPR012677 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc181272g00031 Stsc-Chr181272 210150 213746 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181272g00031 18 222 Eukaryotic Initiation Factors Gene Family AT4G34110 26.761 3.05e-19 87.4
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181272g00031 K12831 - gmx:100792707 533.102