LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc181272g00031	ATGACGACTCGAATAGCGCCTGGTGTCGGCGCCAACTTGCTCGGCCAACACTCCGCCGAGAGGAATCAAGACGCCACCGCCTATGTCGGCAATCTCGACCCTCAAGTCCCCGAAGAGTTGCTCTGGGAGCTTTTCGTTCAGGCTGGCCCCGTAGTTAATGTGTACGTTCCCAAGGACAGAGTCACCAACCAGCACCAGGGATATGGATTTGTTGAATTCCGTAGTGAAGAAGATGCTGACTATGCCATCAAGGTGCTTAATATGATTAAGCTTTACGGGAAGCCAATTCGTGTAAATAAGGCAACCCAAGATAAAAAGAGTTTGGACGTGGGGGCAAACCTTTTCATTGGCAACCTTGATCCGGATGTAGATGAGAAGCTCTTATATGATACTTTCAGTGCATTTGGAGTTATTGTTACTAATCCAAAGATTATGAGAGATCCTGATACTGGAAATTCCCGCGGTTTTGGCTTTATTAGCTATGATTCATTTGAGGCATCTGATTCTGCCATTGAGGCAATGAACGGGCAATATCTTTGCAATCGTCAAATTACAGTGTCATATGCTTACAAAAAAGACACTAAAGGGGAAAGGCATGGCACCCCAGCAGAAAGAGTTTTGGCTGCAAGCAATCCCACTGCGCAGAAGAGTAGGCCTCATACGAGATTTGCCAGTGCACCTCCAACACTTGCTAATGTTGCTCAGGCTAATGGCACCGTTCCTGCTCCGGTGCCTCCTCATCCCTTTGCTAATGGGATGGCTCCCCCACCCATTCCTGCCCTCCGACCACCCCCACCACCCCCTCACGCAGCAGCATTTCAGCCTATGCCTGGAGCTGGGCAACCAGCATGGCATCAACAGCAGCCCGGTCTACCACCTGGAATGCCCCCACCTCAGGTCCAGCAGTTCCGGCCACCTCCATCATGTATGCCAATGCCGCCACCTCCACAAGCTGTTTCGGCTCCTCCAAGGCCTCTTCCGCCACCAACTGGAATGGTAAGCCAACCACCTCTTTGGCGACCACAACCGCCGCCCCCGCAGCAACAAGGTGGACGACCTATGGCTTATCCTCAACCCTCAATGCCTCCACCACCTTCCTATAACCAGATGCCGCCACATCAATGA	1125	0.5173	MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVPEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKATQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTRFASAPPTLANVAQANGTVPAPVPPHPFANGMAPPPIPALRPPPPPPHAAAFQPMPGAGQPAWHQQQPGLPPGMPPPQVQQFRPPPSCMPMPPPPQAVSAPPRPLPPPTGMVSQPPLWRPQPPPPQQQGGRPMAYPQPSMPPPPSYNQMPPHQ	374

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc181272g00031	374	MobiDBLite	consensus disorder prediction	236	374	-	-
	Stsc181272g00031	374	CDD	RRM1_SF3B4	28	100	IPR034158	-
	Stsc181272g00031	374	FunFam	splicing factor 3B subunit 4	109	200	-	-
	Stsc181272g00031	374	CDD	RRM2_SF3B4	111	193	IPR034159	-
	Stsc181272g00031	374	PANTHER	SPLICING FACTOR 3B SUBUNIT 4	14	362	-	-
	Stsc181272g00031	374	MobiDBLite	consensus disorder prediction	289	374	-	-
	Stsc181272g00031	374	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	112	191	IPR000504	GO:0003723
	Stsc181272g00031	374	Gene3D	-	16	111	IPR012677	-
	Stsc181272g00031	374	MobiDBLite	consensus disorder prediction	193	224	-	-
	Stsc181272g00031	374	FunFam	Splicing factor 3b subunit 4	16	108	-	-
	Stsc181272g00031	374	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	114	184	IPR000504	GO:0003723
	Stsc181272g00031	374	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	28	97	IPR000504	GO:0003723
	Stsc181272g00031	374	MobiDBLite	consensus disorder prediction	208	224	-	-
	Stsc181272g00031	374	SUPERFAMILY	RNA-binding domain, RBD	25	195	IPR035979	GO:0003676
	Stsc181272g00031	374	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	25	103	IPR000504	GO:0003723
	Stsc181272g00031	374	SMART	rrm1_1	26	99	IPR000504	GO:0003723
	Stsc181272g00031	374	SMART	rrm1_1	113	187	IPR000504	GO:0003723
	Stsc181272g00031	374	MobiDBLite	consensus disorder prediction	241	273	-	-
	Stsc181272g00031	374	Gene3D	-	112	200	IPR012677	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc181272g00031	Stsc-Chr181272	210150	213746	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc181272g00031	18	222	Eukaryotic Initiation Factors Gene Family	AT4G34110	26.761	3.05e-19	87.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc181272g00031	K12831		-	gmx:100792707	533.102