Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181272g00024 ATGGATGAAATAAAGATTCTCAAACAAATTGCGGATGGAGATCCACATGACAATAAATGTGTTGTGAAGCTTTTGGATCACTTCAAGCATTCGGGGCCTAATGGCCAGCATGTCTGTATGGTTTTTGAATTCCTTGGGGACAATCTTCTTACTCTCATTAAGTATAGTGATTATCGAGGAGTTCCCATTCCCTTAGTTAAGGAAATTTGCTTCCATATTTTGGTGGGTTTGGATTACTTGCATCGTGAACTTTCTATAATACACACTGATTTGAAGCCAGAGAATGTCTTGCTTCTGTCACCACTGGATCCATCTAAGGATCCTAGGAAATCAGGCATTCCACTTGTTGCTCCAAATACCAAGGAGAAGATCAGCAATGGAACCACAAAAGATGAAAAAAGTTTGCATGGGGATTTGACCAAGAACCAGAAAAAGAAAATGCGCAAAAAAGCTAAAAAGGCAGCTCAAGCTTGTGCTGGGATGGAAAGTCCCGAGGAAGCTGAGGAGGATGCTAAAACACCTGAGCAAAATGAATGTAGTAAAGATGTGGAACCGAGTTTAGAATCTGGTGAAGGTAACAGTTCTGTGGGAAAAGATGAATCAACAACGGCTTCTGAAACCAAGGATGATCCCCAAGGAAGTCGTGGTCAGAAGAAAGGTAGCCGCTCTGAAAGAAAGAAGTTACTTGCCTCTGCTGATCTTAAGTGCAAGCTGGTTGATTTTGGTAATGCGTGTTGGACTTATAAACAATTTACATCCGATATTCAGACGAGGCAGTATAGATGTCCTGAAGTTATTCTTGGATCAAAATACTCAACTCCAGCAGATCTATGGTCTTTTGCTTGCATTTGCTTTGAGCTTGCGACTGGTGATGTTCTTTTTGATCCTCACAGTGGTGACAACTATGACAGGGATGAGGATCATTTGGCCTTGATGATGGAGCTTCTTGGAATGATGCCCCGCAAGATTGCATTAGGTGGCCGCTATTCGCGCGAATTTTTCAATAGATATGGTGATTTGAGACACATTCGTCAGTTGCGGTTCTGGCCTCTTAACAAAGTACTGATGGAGAAATATGATTTCAGCGAGCAAGATGCAAATGACATGGCTGGCTTCATTATTCCATTACTTGATTTTGTCCCTGACAAGAGGCCAACAGCGGCTCAGTGCCTTACTCATCCATGGTTGAGTGCCGGACCTCGAACTCTCAAGCCTTCGTCAACTACTGTGCAACCGGCGGTGGAAGATGGAGAAACATTGGAAAAGACGAAGGAAAAGGATGAGAGGGAAGCTGTGGAAGCTGGCATTGGGAATATAGCTATAGATGAAACTCTAAAGCCAGTTGAGGAGTCCCAAACTATACAACAGTCATCAAAATAA 1380 0.4275 MDEIKILKQIADGDPHDNKCVVKLLDHFKHSGPNGQHVCMVFEFLGDNLLTLIKYSDYRGVPIPLVKEICFHILVGLDYLHRELSIIHTDLKPENVLLLSPLDPSKDPRKSGIPLVAPNTKEKISNGTTKDEKSLHGDLTKNQKKKMRKKAKKAAQACAGMESPEEAEEDAKTPEQNECSKDVEPSLESGEGNSSVGKDESTTASETKDDPQGSRGQKKGSRSERKKLLASADLKCKLVDFGNACWTYKQFTSDIQTRQYRCPEVILGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIALGGRYSREFFNRYGDLRHIRQLRFWPLNKVLMEKYDFSEQDANDMAGFIIPLLDFVPDKRPTAAQCLTHPWLSAGPRTLKPSSTTVQPAVEDGETLEKTKEKDEREAVEAGIGNIAIDETLKPVEESQTIQQSSK 459
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc181272g00024 459 FunFam Serine/threonine-protein kinase SRPK-like protein 226 396 - -
Stsc181272g00024 459 Gene3D Transferase(Phosphotransferase) domain 1 42 397 - -
Stsc181272g00024 459 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 1 421 - -
Stsc181272g00024 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 86 98 IPR008271 GO:0004672|GO:0006468
Stsc181272g00024 459 SMART serkin_6 1 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181272g00024 459 MobiDBLite consensus disorder prediction 101 225 - -
Stsc181272g00024 459 MobiDBLite consensus disorder prediction 125 141 - -
Stsc181272g00024 459 MobiDBLite consensus disorder prediction 417 431 - -
Stsc181272g00024 459 MobiDBLite consensus disorder prediction 187 201 - -
Stsc181272g00024 459 SUPERFAMILY Protein kinase-like (PK-like) 2 408 IPR011009 -
Stsc181272g00024 459 MobiDBLite consensus disorder prediction 401 431 - -
Stsc181272g00024 459 Gene3D Phosphorylase Kinase; domain 1 1 41 - -
Stsc181272g00024 459 Pfam Protein kinase domain 229 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181272g00024 459 Pfam Protein kinase domain 2 98 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181272g00024 459 ProSiteProfiles Protein kinase domain profile. 1 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181272g00024 459 MobiDBLite consensus disorder prediction 202 225 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc181272g00024 Stsc-Chr181272 159169 161635 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181272g00024 1 442 EF-hand Containing Proteins AT5G22840 67.627 0.0 588
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Stsc181272g00024 Pkinase 4.2e-20 CL0016
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181272g00024 K08832 - gmx:100809984 724.546