LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc181272g00024	ATGGATGAAATAAAGATTCTCAAACAAATTGCGGATGGAGATCCACATGACAATAAATGTGTTGTGAAGCTTTTGGATCACTTCAAGCATTCGGGGCCTAATGGCCAGCATGTCTGTATGGTTTTTGAATTCCTTGGGGACAATCTTCTTACTCTCATTAAGTATAGTGATTATCGAGGAGTTCCCATTCCCTTAGTTAAGGAAATTTGCTTCCATATTTTGGTGGGTTTGGATTACTTGCATCGTGAACTTTCTATAATACACACTGATTTGAAGCCAGAGAATGTCTTGCTTCTGTCACCACTGGATCCATCTAAGGATCCTAGGAAATCAGGCATTCCACTTGTTGCTCCAAATACCAAGGAGAAGATCAGCAATGGAACCACAAAAGATGAAAAAAGTTTGCATGGGGATTTGACCAAGAACCAGAAAAAGAAAATGCGCAAAAAAGCTAAAAAGGCAGCTCAAGCTTGTGCTGGGATGGAAAGTCCCGAGGAAGCTGAGGAGGATGCTAAAACACCTGAGCAAAATGAATGTAGTAAAGATGTGGAACCGAGTTTAGAATCTGGTGAAGGTAACAGTTCTGTGGGAAAAGATGAATCAACAACGGCTTCTGAAACCAAGGATGATCCCCAAGGAAGTCGTGGTCAGAAGAAAGGTAGCCGCTCTGAAAGAAAGAAGTTACTTGCCTCTGCTGATCTTAAGTGCAAGCTGGTTGATTTTGGTAATGCGTGTTGGACTTATAAACAATTTACATCCGATATTCAGACGAGGCAGTATAGATGTCCTGAAGTTATTCTTGGATCAAAATACTCAACTCCAGCAGATCTATGGTCTTTTGCTTGCATTTGCTTTGAGCTTGCGACTGGTGATGTTCTTTTTGATCCTCACAGTGGTGACAACTATGACAGGGATGAGGATCATTTGGCCTTGATGATGGAGCTTCTTGGAATGATGCCCCGCAAGATTGCATTAGGTGGCCGCTATTCGCGCGAATTTTTCAATAGATATGGTGATTTGAGACACATTCGTCAGTTGCGGTTCTGGCCTCTTAACAAAGTACTGATGGAGAAATATGATTTCAGCGAGCAAGATGCAAATGACATGGCTGGCTTCATTATTCCATTACTTGATTTTGTCCCTGACAAGAGGCCAACAGCGGCTCAGTGCCTTACTCATCCATGGTTGAGTGCCGGACCTCGAACTCTCAAGCCTTCGTCAACTACTGTGCAACCGGCGGTGGAAGATGGAGAAACATTGGAAAAGACGAAGGAAAAGGATGAGAGGGAAGCTGTGGAAGCTGGCATTGGGAATATAGCTATAGATGAAACTCTAAAGCCAGTTGAGGAGTCCCAAACTATACAACAGTCATCAAAATAA	1380	0.4275	MDEIKILKQIADGDPHDNKCVVKLLDHFKHSGPNGQHVCMVFEFLGDNLLTLIKYSDYRGVPIPLVKEICFHILVGLDYLHRELSIIHTDLKPENVLLLSPLDPSKDPRKSGIPLVAPNTKEKISNGTTKDEKSLHGDLTKNQKKKMRKKAKKAAQACAGMESPEEAEEDAKTPEQNECSKDVEPSLESGEGNSSVGKDESTTASETKDDPQGSRGQKKGSRSERKKLLASADLKCKLVDFGNACWTYKQFTSDIQTRQYRCPEVILGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIALGGRYSREFFNRYGDLRHIRQLRFWPLNKVLMEKYDFSEQDANDMAGFIIPLLDFVPDKRPTAAQCLTHPWLSAGPRTLKPSSTTVQPAVEDGETLEKTKEKDEREAVEAGIGNIAIDETLKPVEESQTIQQSSK	459

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc181272g00024	459	FunFam	Serine/threonine-protein kinase SRPK-like protein	226	396	-	-
	Stsc181272g00024	459	Gene3D	Transferase(Phosphotransferase) domain 1	42	397	-	-
	Stsc181272g00024	459	PANTHER	PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED	1	421	-	-
	Stsc181272g00024	459	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	86	98	IPR008271	GO:0004672\|GO:0006468
	Stsc181272g00024	459	SMART	serkin_6	1	396	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc181272g00024	459	MobiDBLite	consensus disorder prediction	101	225	-	-
	Stsc181272g00024	459	MobiDBLite	consensus disorder prediction	125	141	-	-
	Stsc181272g00024	459	MobiDBLite	consensus disorder prediction	417	431	-	-
	Stsc181272g00024	459	MobiDBLite	consensus disorder prediction	187	201	-	-
	Stsc181272g00024	459	SUPERFAMILY	Protein kinase-like (PK-like)	2	408	IPR011009	-
	Stsc181272g00024	459	MobiDBLite	consensus disorder prediction	401	431	-	-
	Stsc181272g00024	459	Gene3D	Phosphorylase Kinase; domain 1	1	41	-	-
	Stsc181272g00024	459	Pfam	Protein kinase domain	229	396	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc181272g00024	459	Pfam	Protein kinase domain	2	98	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc181272g00024	459	ProSiteProfiles	Protein kinase domain profile.	1	396	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc181272g00024	459	MobiDBLite	consensus disorder prediction	202	225	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc181272g00024	Stsc-Chr181272	159169	161635	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc181272g00024	1	442	EF-hand Containing Proteins	AT5G22840	67.627	0.0	588

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_SRPK	Stsc181272g00024		Pkinase	4.2e-20	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc181272g00024	K08832		-	gmx:100809984	724.546