Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181272g00013 ATGGGAAGCAAGGTCACAGTGACGGACCAACACTTGTCCACCGTCCGATCCATCGTTGGCTCCGAATTCACCGACATGGACATCATCAGAGCACTCCATATGGCCAAAAACGACGTCACCGCCGCCATCAACATCATCTTCGACACCCACACTCCCACCATCGTCAAACCTAAACCCACACCACCTACAAAGAATCCCGAACCTCTTCTCAATTCATTTTCTCCTATGGATACTGCCACTCGCACTGTTGCTGCCCGCACCAAGAACAATAGCGCTGCTGTTCGTGGAGGAGATGACAGTAGCTGCTCCAAGGCGTCCGACGATTGGTGTTTTGCTGGTTCCGGCGAGATGTCGGGGATGTCCACGTGTAAAGGGAGGACTATAAATTCAGGCGACGCAGTGGTTTTCAAGTTTCCTGCCAAGTCTGTTTCAGCTGGGCCTTCGCCGGGGAAGGTCTTCGGGAAGGGGAGATCTTGTTCGGAGATCGTTCGGTTCTCCACGGATCAAGCTGGAGAAATAGGTAGAATACCAAATGAATGGGCTCGGTGTCTGTTACCTCTTGTTCGGGATAATAAGGTTAGGATCGAGGGGTGCTGTAAATTTGCACCTAATGTTTTGGGCATCATGGATACCATTATTTTGTCAGTCAGTGTATTTATCAATAGGTCAATGTTTGTTAAGCAACAGCAGGTATCTCTCAAGGATGCCACTAGCAACTCCACAGATGAATCAGTGTTCCATCCTCTTCCTATCCTGTTTCGATTGCTTGGCCTGGAGCCTTTTAAGAAGGCAGAGTTAACTCCTGGTGACTTCTATTCCAACAAGCGTCCTATCAACCAGAAGGTTCCTTTACAATTGATCAAGTCTGATCATCCTTCTCAAAATGGTGATGAGAATAAAGAGGATTCCATCTCTGAAACTGATCTTGATAATATTGTTGGTGTGGGATCAAACTCAGAGTTAGAGGAAATGGATCCCCCAGGTAGTCTTCAGTGTGAGCTACGGCCCTATCAAAAGCAAGCCCTTTATTGGATGGTTCAGATGGAGAAGGGACGATCTGTAGATGAGACAGCAACAACCCTTCATCCATGCTGGGAAGCATATCGCTTGGCTGACAAGAGGGAGCTTATTATTTATTTGAATGCATTTTCTGGTGAAGCCACGACTGAATTTCCTAGCACCCTTCAAATGGCAAAAGGAGGGATTTTGGCAGATTCTATGGGACTTGGAAAGACCATCATGACCATATCACTTCTTCTTGCCCATTCAGGAAGAGGTGGATCATTAGGCAGTCAACCCTTAGCTCAAACTGAGCAATATACTGAAGGCGGTGAAGTTAGTGATACAGTGGAGAACTTCTCAAACATTCCGAAGAAGGCAACCAAATTTGCTGGTTTTGACAAACTGATGAAGAAAAAGAATGCTCTAACAAGTGGTGGCAACTTGATAATATGTCCCATGACTCTTCTTGGGCAATGGAAGGCAGAAATTGAAACTCACGTACAACCTGGATCTCTGTCTATATATGTTCATTATGGACAAAGTAGGCCAAAAGATGCAAAAAGTCTTTCTCAGAGTGATGTTGTAATTACTACATATGGAGTTTTAGCCTCTGAATTTTCCAGTGAGAACACAGAGGATAATGGTGGACTTTTTTCAATTAGGTGGTTCAGAGTGGTTCTTGACGAAGCACATACTATAAAATCTTCTAAAAGTCAAATTTCTATTGCTGCTGCTGCTCTAATTGCTGACAACCGCTGGTGTCTTACTGGCACTCCTATCCAGGTTAAATATTATGAACTTACTCTTGATGATTGTTCTTTTTGTCTTCTTCGATTTCTGAGAATAGAGCCTTGGGGTCATTGGGCCTGGTGGAACAAACTTGTTCAGAAACCATTTGAAGGAGGTGATGCTAGAGGGTTGAAGTTAGTTCAGTCCATTTTGAAGCCAATCATGTTGAGGAGAACCAAGTATAGCACAGATCGAGAGGGCAAGCCTATCCTAGTTCTACCTCCAGCTGATATGCAGATAATTTACTGTGAACAAACAGAAGCTGAGAAGGACTTTTATGAGGCCTTATTTAAAAGATCTAAGGTCAGGTTTGACCAGTTTGTTGAGCAAGGGCGTGTTCTTCATAATTATGCTTCAATACTGGAGTTGCTTTTACGCCTTCGGCAATGTTGCGATCATCCTTATCTTGTAATGAGCCGAGGGGACACCCAAGAATTTGCTGATCTAAACAAACTAGCTAAGCGGTTCCTTCGAGGAACCCATAATACTTCAGAAGGTGAAGTAAATGATGCACCTTCACTGGCTTATGTTCAAGAAGTAGTCGAAGAGCTACGTAAAGGGGACCAGGGAGAGTGTCCAATATGTCTTGAAGCATTTGAAGATGCAGTGTTGACTCCTTGTGCTCACCGGCTATGCCGGGAATGCCTCTTGGCAAGTTGGCGCAATTCTGCTTCTGGTTTATGTCCTGTTTGCAGAAAAACAGTCAGCCGGCAGGATCTTATTACTGCTCCTACTGATAGTCGGTTTCGAATTGATATTGAGAAGAACTGGATAGAGTCATGCAAGGTAACTCTTCTTTTGCATGAACTTGAAAGTCTTCGGTCATCAGGCTCCAAGAGCATAGTTTTTAGCCAATGGACTGCTTTTCTAGACCTTTTGCAGATTCCCTTTACAAGGAATAATATTTCATTTGTTCGACTTGATGGGACTTTAAACCAGCAGCAGAGGGAGAAAGTGATCAAACAATTCTCAGAAGACGATGAAACACTGGTCTTGTTGATGTCATTAAAAGCTGGTGGAGTGGGTATAAATCTAACAGCGGCTTCAAATGCTTTTGTCATGGATCCATGGTGGAATCCGGCTGTAGAAGAACAAGCTGTAATGCGCATCCACCGCATTGGACAAACAAAGAAGGTAGCCATTAAACGGTTTATTGTGAAGGGGACAGTTGAAGAGAGAATGGAGGCAGTGCAAGCGCGGAAACAACGAATGATTTCTGGTGCCCTGACCGATCAAGAGGTTCGAAATGCACGGATTGAGGAGCTTAAGATGCTTTTCACTTAG 3075 0.4429 MGSKVTVTDQHLSTVRSIVGSEFTDMDIIRALHMAKNDVTAAINIIFDTHTPTIVKPKPTPPTKNPEPLLNSFSPMDTATRTVAARTKNNSAAVRGGDDSSCSKASDDWCFAGSGEMSGMSTCKGRTINSGDAVVFKFPAKSVSAGPSPGKVFGKGRSCSEIVRFSTDQAGEIGRIPNEWARCLLPLVRDNKVRIEGCCKFAPNVLGIMDTIILSVSVFINRSMFVKQQQVSLKDATSNSTDESVFHPLPILFRLLGLEPFKKAELTPGDFYSNKRPINQKVPLQLIKSDHPSQNGDENKEDSISETDLDNIVGVGSNSELEEMDPPGSLQCELRPYQKQALYWMVQMEKGRSVDETATTLHPCWEAYRLADKRELIIYLNAFSGEATTEFPSTLQMAKGGILADSMGLGKTIMTISLLLAHSGRGGSLGSQPLAQTEQYTEGGEVSDTVENFSNIPKKATKFAGFDKLMKKKNALTSGGNLIICPMTLLGQWKAEIETHVQPGSLSIYVHYGQSRPKDAKSLSQSDVVITTYGVLASEFSSENTEDNGGLFSIRWFRVVLDEAHTIKSSKSQISIAAAALIADNRWCLTGTPIQVKYYELTLDDCSFCLLRFLRIEPWGHWAWWNKLVQKPFEGGDARGLKLVQSILKPIMLRRTKYSTDREGKPILVLPPADMQIIYCEQTEAEKDFYEALFKRSKVRFDQFVEQGRVLHNYASILELLLRLRQCCDHPYLVMSRGDTQEFADLNKLAKRFLRGTHNTSEGEVNDAPSLAYVQEVVEELRKGDQGECPICLEAFEDAVLTPCAHRLCRECLLASWRNSASGLCPVCRKTVSRQDLITAPTDSRFRIDIEKNWIESCKVTLLLHELESLRSSGSKSIVFSQWTAFLDLLQIPFTRNNISFVRLDGTLNQQQREKVIKQFSEDDETLVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKKVAIKRFIVKGTVEERMEAVQARKQRMISGALTDQEVRNARIEELKMLFT 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181272g00013 1024 Pfam Helicase conserved C-terminal domain 861 971 IPR001650 -
Stsc181272g00013 1024 Pfam SNF2-related domain 337 734 IPR000330 GO:0005524|GO:0140658
Stsc181272g00013 1024 Pfam Zinc finger, C3HC4 type (RING finger) 786 833 - -
Stsc181272g00013 1024 CDD DEXDc_SHPRH-like 334 655 - -
Stsc181272g00013 1024 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 392 611 IPR014001 -
Stsc181272g00013 1024 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 322 655 IPR027417 -
Stsc181272g00013 1024 Gene3D - 671 786 IPR027417 -
Stsc181272g00013 1024 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 859 1024 IPR001650 -
Stsc181272g00013 1024 ProSiteProfiles Zinc finger RING-type profile. 789 829 IPR001841 -
Stsc181272g00013 1024 SMART ultradead3 330 623 IPR014001 -
Stsc181272g00013 1024 Gene3D - 459 656 IPR038718 -
Stsc181272g00013 1024 SMART helicmild6 888 971 IPR001650 -
Stsc181272g00013 1024 Gene3D - 838 1022 IPR027417 -
Stsc181272g00013 1024 MobiDBLite consensus disorder prediction 286 307 - -
Stsc181272g00013 1024 Pfam HIRAN domain 113 216 IPR014905 GO:0003676|GO:0008270|GO:0016818
Stsc181272g00013 1024 SUPERFAMILY RING/U-box 778 835 - -
Stsc181272g00013 1024 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 667 1012 IPR027417 -
Stsc181272g00013 1024 SMART ring_2 789 828 IPR001841 -
Stsc181272g00013 1024 Gene3D - 391 443 IPR038718 -
Stsc181272g00013 1024 CDD SF2_C_SNF 855 982 - -
Stsc181272g00013 1024 MobiDBLite consensus disorder prediction 293 307 - -
Stsc181272g00013 1024 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 787 837 IPR013083 -
Stsc181272g00013 1024 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 104 1024 - -
Stsc181272g00013 1024 SMART HIRAN_2 110 220 IPR014905 GO:0003676|GO:0008270|GO:0016818
Stsc181272g00013 1024 ProSitePatterns Zinc finger RING-type signature. 804 813 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181272g00013 Stsc-Chr181272 80271 86895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181272g00013 1 1024 RAD5 or RAD16-like Gene Family AT5G22750 69.914 0.0 1467
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc181272g00013 SNF2_N 4.4e-78 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181272g00013 K15505 - gmx:100794452 1642.48