Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181272g00012 ATGACTGCTTATGGGAAGAAAGATAAGAAGAAGAAGAAGGTGAAGAAGAAGAAGATGAAGAACGTGCAGCATGAGCATGAAGCAACAATAACAACTACTAAAGAAGCTGCATTATCTGATGATGACCCGGAAATAAACAAGGCAGAGAAGAACAAGAACAAGAAGGGGATGATGCCTTTGCAGCAAACATCACCATCAACTGAAGCTGCAGAGAACAAGAAGAAGAAGAAGAAGGGGATTAGAAGGGAGAGGCCTTCAGAGGACTTGGAGCTTGTTCAAGATTCTGCACACTTGCAAACACCATCACCTGAACCTGAATCAGGTTTTCCCAACAAGAAGCCAAGAATTGAAGCACCCAAATCAGATGCTGAAGATGGAATGGTAGCAGAGAAATCGAGCAAGCTTGTCACTTCTGAGTTGATGGTGCATCCTGGAGAGGATCTGGTCAAGAAGATAATGAATGCATGGGAAGAAAGCGATCAGTGTGGTTGTATAATTTCTGCCACTGGTAATGTATCAAGAGCCGAATTTAGCAGACCAAACTCAAATGCTACTCATATATATGAGGGACACTTTGAGGTTCTGTCTATGTCTGGACATTATAGAATGCTAAGCAATGGTAATGTGGATTCGTGTCTGAGCGTTACACTGGCTGATTCTGAGGGAAAGGCTTTCGGTGGTAACCACGTCAATAAATTGATAGCTTCTGGTCCTGTAGGGCTTCTTATGGTGAACTATGAGAAAGAAAAGGGGCCTTCTGCTGCCGTTGTTCCTGCTGCTCCAACAACTGCCACTGCTGCTCCAACAAATGCCAAAGCATCCTCTGGTAGTGACAAGAAACAGAAGAAGAAGAAAAAGAACAAGAAGAAGATGCAAAATAGGTTACTTTAA 891 0.4299 MTAYGKKDKKKKKVKKKKMKNVQHEHEATITTTKEAALSDDDPEINKAEKNKNKKGMMPLQQTSPSTEAAENKKKKKKGIRRERPSEDLELVQDSAHLQTPSPEPESGFPNKKPRIEAPKSDAEDGMVAEKSSKLVTSELMVHPGEDLVKKIMNAWEESDQCGCIISATGNVSRAEFSRPNSNATHIYEGHFEVLSMSGHYRMLSNGNVDSCLSVTLADSEGKAFGGNHVNKLIASGPVGLLMVNYEKEKGPSAAVVPAAPTTATAAPTNAKASSGSDKKQKKKKKNKKKMQNRLL 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181272g00012 296 Pfam Plants and Prokaryotes Conserved (PCC) domain 140 244 IPR005175 -
Stsc181272g00012 296 MobiDBLite consensus disorder prediction 1 20 - -
Stsc181272g00012 296 MobiDBLite consensus disorder prediction 1 129 - -
Stsc181272g00012 296 CDD DUF296 144 239 IPR005175 -
Stsc181272g00012 296 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 48 275 IPR039605 GO:0003680
Stsc181272g00012 296 MobiDBLite consensus disorder prediction 278 296 - -
Stsc181272g00012 296 SUPERFAMILY AF0104/ALDC/Ptd012-like 140 245 - -
Stsc181272g00012 296 MobiDBLite consensus disorder prediction 252 296 - -
Stsc181272g00012 296 Gene3D - 139 256 - -
Stsc181272g00012 296 MobiDBLite consensus disorder prediction 21 54 - -
Stsc181272g00012 296 ProSiteProfiles PPC domain profile profile. 132 269 IPR005175 -
Stsc181272g00012 296 MobiDBLite consensus disorder prediction 110 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181272g00012 Stsc-Chr181272 77133 78641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181272g00012 69 246 AT-hook Motif Nuclear Localized (AHL) Family AT5G62260 29.670 1.62e-20 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181272g00012 - - ahf:112706866 128.642