Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181272g00008 ATGGAGTTTTGGGGTACTGAGGTTAAGGTTGGTGAGGTTGTTAGAGTAGAGAACGAGGACTCTGATGTCTGCATACACCTTTCTCAGGTTGCTCTTGGTGAGTCCAAGAAGGACAAACCCAGTGAGCCTGTTGTTGTTTATTTGAAAGTTGGAGAGCAGAAGTTTGTTCTGGGTACCCTTAACAAGGACAAGTTTCCTCAGATTGCTCTTGATTTGGTTGTTGAGAAGGAGTTTGAGCTTTTCCACAACTCCAAGAATGCCAGTGTCCACTTTTGTGGATACAAGACATATGTTGCTGATGATGAGGAGGATGATTTTTCAGATGATAGTAGTGATGAGGATCTTCCATTGCCACTTGCGGAAAATGGAAAAACTGAAGTAAAAGCTGCGGAAGTAAAGGTTTCTCAATCTAAAAAACCTGATGGCCAGGCTGGTCCATCTAAACAAGTAAAAGTTATTGAACCGAAGAAAGAAGAGGATTCAGACGAATCTGACGAGGATGATGAAACCGACAGTTCTGATGAGGAGATGGAGGATGGCGAGAGTGATGAGGAGGGTGAAAGTGATGATGATGAAGACGAGGAAGATACCCCACCTAAGAAGGTGGACCAAGGAAAGAAGAGGCCAAATGAATCTGCGATAAAAACTCCTGTTTCTAACAAGAAAGCAAAAAATGCTACCCCTGAAAAGACCGATGCTAAGAAAGGTGGCCATACAGCAACTCCTCACCCAGCAAAGAAAGGTGGAAAGACTCCAAAAAGTGATGGGAAGGACACTCCCAAGTCTGGTGGACAATTCCTCTGCAACAGTTGCAACAAGAATTTCAATTCTCAAACTGGTCTCGAACAACATAGCAAGGCTAAGCATGGTCAGTGA 876 0.4372 MEFWGTEVKVGEVVRVENEDSDVCIHLSQVALGESKKDKPSEPVVVYLKVGEQKFVLGTLNKDKFPQIALDLVVEKEFELFHNSKNASVHFCGYKTYVADDEEDDFSDDSSDEDLPLPLAENGKTEVKAAEVKVSQSKKPDGQAGPSKQVKVIEPKKEEDSDESDEDDETDSSDEEMEDGESDEEGESDDDEDEEDTPPKKVDQGKKRPNESAIKTPVSNKKAKNATPEKTDAKKGGHTATPHPAKKGGKTPKSDGKDTPKSGGQFLCNSCNKNFNSQTGLEQHSKAKHGQ 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181272g00008 291 ProSitePatterns Zinc finger C2H2 type domain signature. 268 289 IPR013087 -
Stsc181272g00008 291 ProSiteProfiles Zinc finger C2H2 type domain profile. 266 291 IPR013087 -
Stsc181272g00008 291 MobiDBLite consensus disorder prediction 159 197 - -
Stsc181272g00008 291 Pfam Nucleoplasmin-like domain 3 94 IPR041232 -
Stsc181272g00008 291 MobiDBLite consensus disorder prediction 263 285 - -
Stsc181272g00008 291 Gene3D Nucleoplasmin core domain 1 101 - -
Stsc181272g00008 291 MobiDBLite consensus disorder prediction 103 291 - -
Stsc181272g00008 291 FunFam Histone deacetylase HDT1 1 100 - -
Stsc181272g00008 291 MobiDBLite consensus disorder prediction 225 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181272g00008 Stsc-Chr181272 42858 45392 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181272g00008 1 109 C2H2 Transcription Factor Family AT5G03740 46.789 1.05e-27 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc181272g00008 NPL 5.8e-14 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181272g00008 - - lang:109358867 331.257