Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181272g00001 ATGAGATTGGAGAAGTGCTGGTTTTGTTCCTCAACCGTATATCCTGCTCATGGAATCCAGTTCGTTCGTAATGATGCCAAGGTTTTTCGATTTTGTAGGTCTAAATGCCATAAGAACTTCAAAATGAAGAGGAACCCTCGTAAAGTTAAATGGACCAAGGCATATCGAAGAGTGCATGGAAAAGATATGACACAGGATTCAACGTTTGAATTCGAGAGGAAGCGGAACAAATCTGAGAGATATGACAGAAACCTTGCTGAGAATGTGCTTAAGGCCATTCCTAAGATTGATAAAATCAGACTCACCAGAGAGGAGAGACACCATAAGAATAGGTCCTTCCTTGAATCTATTATTATTGTGTATATAGTGTGGATTTCTGGCACCTTATTGTCACGGTCTTGGACACACTCCAACGCTACCGTGCCGGCACTTGAACTTACTCAACCTCTTGAGCTAAGATCAAGTCAGCCTAACCCTCAATATTAG 486 0.4156 MRLEKCWFCSSTVYPAHGIQFVRNDAKVFRFCRSKCHKNFKMKRNPRKVKWTKAYRRVHGKDMTQDSTFEFERKRNKSERYDRNLAENVLKAIPKIDKIRLTREERHHKNRSFLESIIIVYIVWISGTLLSRSWTHSNATVPALELTQPLELRSSQPNPQY 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181272g00001 161 CDD Ribosomal_L24e_L24 1 54 IPR000988 -
Stsc181272g00001 161 Gene3D Ribosomal protein L24e 1 69 IPR038630 -
Stsc181272g00001 161 ProSitePatterns Ribosomal protein L24e signature. 8 25 IPR023442 -
Stsc181272g00001 161 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 56 - -
Stsc181272g00001 161 SMART 4TRASH 6 44 IPR011017 -
Stsc181272g00001 161 FunFam probable ribosome biogenesis protein RLP24 1 67 - -
Stsc181272g00001 161 Pfam Ribosomal protein L24e 1 65 IPR000988 -
Stsc181272g00001 161 PANTHER 60S RIBOSOMAL PROTEIN L24 1 111 IPR000988 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181272g00001 Stsc-Chr181272 7 732 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181272g00001 1 111 Cytoplasmic Ribosomal Protein Gene Family AT2G44860 79.279 1.75e-65 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181272g00001 K02896 - gmx:100778077 232.261