Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181271g00027 ATGGAGTTTTGGGTACTTATAACCAGCAATGAGTTTCAATCAGGTGGCCCTCTTAAACAGAATTTCACCTCTCATGTAGGCCTTATTACTCTTACAATGAGGAAACAAGTTCAAAGGTGGCCCTATGATTTTCTAGCTTCAGGGGATTTCCACAAGTCTCGCCAACGAGGCACTGTTTATGGCACATTAAAAGTCCAAGACAGGTTCATAAGTGATGAGCTGATTTTGGCAGGAAATGCATATGTTGGTCTGGCACCACCAGGACTAGCTGGATCCTGGCAAACAGAATGCAATCAATCTATTGGTCAGCGAGACGTAGCTCAGATCCACAGCGAACGCCTATGGGCTAGAAAGAAAAAGTATAGTGGGAGTTATAATGTTTTTGCTTGGGTCCTTGCTTTCATTGGAGATTATTGTAACAATGTTGTCCTCACCGTAAACCCAGGAAGTAAAATAAATGTTGGTGAGATTGTATATAAACCCCCAAGAGATGGACCCACTTTATGGGAAATAGGCATTCCTAATCGCTCTGCTGTTGAATTTTATGTTCCTGATCCAAATCCAAATTATGTTAACAAACTTTATCTCAATCATCCAGAGAGGAAGAAAGATGATGGCAGTTACCATGGAACAACATGGCAAATTAAGTTCAAGCTTCATAATGTGCAAAGAAATGGAACTTATAAGTTGCGGCTTGCACTTGCAACTGCAAATTTCTCCAAATCACAAGTTAGAGTGAATAATCCAAAAGAATATCCTCCAATGTTTACAAGTGAGGTGATTGGGAAGGATAACACCATAGCTAGACATGAAATTCATGGACTGTATAGGCTATACAACATTGATATTTCATCTCATTTATTAGTGAAAGATGAAAATATCATATTTCTTACACAAACTATGGCTAATGGTCCCTTTGAAGGCATAATGTATGATTATATTCGTTTAGAAGCTCCTCCTCCTCATAGGAGACAAGGTTAG 981 0.3914 MEFWVLITSNEFQSGGPLKQNFTSHVGLITLTMRKQVQRWPYDFLASGDFHKSRQRGTVYGTLKVQDRFISDELILAGNAYVGLAPPGLAGSWQTECNQSIGQRDVAQIHSERLWARKKKYSGSYNVFAWVLAFIGDYCNNVVLTVNPGSKINVGEIVYKPPRDGPTLWEIGIPNRSAVEFYVPDPNPNYVNKLYLNHPERKKDDGSYHGTTWQIKFKLHNVQRNGTYKLRLALATANFSKSQVRVNNPKEYPPMFTSEVIGKDNTIARHEIHGLYRLYNIDISSHLLVKDENIIFLTQTMANGPFEGIMYDYIRLEAPPPHRRQG 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181271g00027 326 Pfam Polysaccharide lyase family 4, domain III 167 316 IPR029411 -
Stsc181271g00027 326 CDD RGL4_C 169 317 - -
Stsc181271g00027 326 Gene3D - 165 317 - -
Stsc181271g00027 326 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 3 33 - -
Stsc181271g00027 326 SUPERFAMILY Galactose-binding domain-like 164 317 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181271g00027 Stsc-Chr181271 203606 207226 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181271g00027 4 320 Polysaccharide Lyase AT4G24430 43.932 1.23e-105 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181271g00027 K18195 - qsa:O6P43_015436 400.593