Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181270g00037 ATGATTGGCAAAGGGGGATTTGGAGAAGTTTACAAGGGTATTCTTCCTGATGGGAGACATGTTGCTATAAAAAGACTTTCTACTAGTTCTAGACAAGGTGTAGTTGAGTTCAAGAATGAAATTTTGTTGATAGCTAAGCTTCAACACAGGAATCTAGTATCTTTTATGGGATTTTGTTTTGAAGAAGAGGAGAAAATACTACTTTATGAGTACGTGCCAAATGGAAGTCTCGATTACTTTTTATTCGATTTTGGCATGGCTAGAATAGTTGACATTGATCAAGATAGAGGAAAAACAAACAGAATTGTTGGTACATATGGTTATATGTCTCCAGAATATGTTATGTTTGGACAATTTTCAGAAAAATCAGATGTTTTTAGCTTTGGAGTCATAATTTTCGAGATTATTACGGGACAAAAAAATTCAAATTCTTATACTTCAAACTGTGTTACAGAAAGTCTCTTAAATTATGTTTGGAAACGATGGAAGGATGAAACACCATTAAGCATATTGGATCCAAAAATAAAGGAAGATTATCACTACATGGAAGTTATAAAATGCATTCAAATTGGTTTATTATGCGTTCAAGAAAACCCAAATTCTAGACCCACAATGGCGGCAATTGTTACATATCTTAATAATCTTTCTCTTGAATTGTCATCTCCACAAGAACCAGCATTTTTCTTTCCTGGTAGTAGCTATGGTCTTATGGATCCAAATATAGTTGCAGAAGAATCAAATTCCAGTCAATCTGGCAAAAGTTCAACAACGTTGTCTATAAATGAAATGTCAATAAGTAAATTTCATCCTCGATAA 816 0.3309 MIGKGGFGEVYKGILPDGRHVAIKRLSTSSRQGVVEFKNEILLIAKLQHRNLVSFMGFCFEEEEKILLYEYVPNGSLDYFLFDFGMARIVDIDQDRGKTNRIVGTYGYMSPEYVMFGQFSEKSDVFSFGVIIFEIITGQKNSNSYTSNCVTESLLNYVWKRWKDETPLSILDPKIKEDYHYMEVIKCIQIGLLCVQENPNSRPTMAAIVTYLNNLSLELSSPQEPAFFFPGSSYGLMDPNIVAEESNSSQSGKSSTTLSINEMSISKFHPR 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181270g00037 271 Gene3D Phosphorylase Kinase; domain 1 1 66 - -
Stsc181270g00037 271 FunFam Putative DUF26-domain receptor-like protein kinase family protein 7 71 - -
Stsc181270g00037 271 ProSiteProfiles Protein kinase domain profile. 1 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181270g00037 271 Pfam Protein tyrosine and serine/threonine kinase 83 212 IPR001245 GO:0004672|GO:0006468
Stsc181270g00037 271 Pfam Protein tyrosine and serine/threonine kinase 2 81 IPR001245 GO:0004672|GO:0006468
Stsc181270g00037 271 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 83 267 - -
Stsc181270g00037 271 ProSitePatterns Protein kinases ATP-binding region signature. 2 24 IPR017441 GO:0005524
Stsc181270g00037 271 SUPERFAMILY Protein kinase-like (PK-like) 1 237 IPR011009 -
Stsc181270g00037 271 Gene3D Transferase(Phosphotransferase) domain 1 67 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181270g00037 Stsc-Chr181270 196496 197874 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181270g00037 2 271 Receptor kinase-like Gene Family AT3G45860 41.818 1.20e-81 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc181270g00037 PK_Tyr_Ser-Thr 1.9e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181270g00037 - - vum:124825842 381.719