Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181270g00032 ATGTTCCAGACCAAAAATATCACACTACCATTAATACTTAGAAACCTAACACTAATAACACTAACACTAACCGTGCTCTTGACTTCACAACATGCATCAGCTTCTGTTTTCGATTCAGTCAACTGCACAACCAACGCTACCTTCACTGCAAACAGCACCTTCCACGTCAACCTCAACACCCTCCTCTCATATCTTACCTCCAATGTCACCAACCGCAACAACCTCAGGTTCTTCAACGCAACTGCAGCCTCTCACGACGGTTCAGACGCCGCCGTCTACGGCCTCTTCATGTGCCGCGGTGACGTCCCACTTCCACTCTGCCGAGAGTGCGTTGGTTTCGCAGCGCAGAACATAGCCTCTTCTTGCCCCTCTGCTAAAGAAGCTGTCATCTGGTACAACGAGTGCTTGTTACGCTACTCCGACAGATTCTTCTTCTCCACCATGGACGAATGGCCAAGGTACCAGATCAAGATTCCGTTGGGGGACCCTGTTGTTTTGCACAGCAAAGGCTTCTACAATGCTTTAGGCTCCATATTCAATGGGATTGGAAATGAAGCAGCCTTGGCTCTAGAAGCTTCTGATAACCAGTATGCAGTCAAGCAAGCCGCCGCCACTGCCGCCACTACAGTGTACGGTCTTGCACAGTGCACGCCGGACCTCTCAGCTGCCGACTGCCGGCGGTGTATCGTGGATGCGGTGGCTGAGTTTCCCAGGACTTGCTGCGGAGGGAGCATAGGGGGAAGTGTTATGTTTCCCAGTTGCATAGTTAGGTATGAAACGTATCCGTTTTATCAGCATTCTGGTACCTCCGAGACATTAACAACCTCAACTAATAAGGGTGGAAGAAATAGCAAAGCAGAAGTGATTGCAATAGTTGTAGTTGGATTTGTGATTTTGGTGATGCTTTTGTGCATTGGCTACTTTTACCTTGGAAGAAAACTGAAGAAGAGACGTCTCAGAATCAGAAAAAACTTAGGGCCTGATATGACTGCCTCGGAGTCCTTGCAATTTGATTTGGCTACAGTTCAATTTGCAACAAACAATTTTTGTGAAGGGAGCAGGGTAGGCAAAGGGGGTTATGGAGAAGTCTACAAGGGAATTCTTCCTAGCGGAGAAGAAATAGCAGTGAAGAGGCTCTCAAGAAATTCTGGACAAGGAGTAGAGGAGTTCAAGAATGAAGTGTTGTTGATAGCTAAACTTCAGCACAGGAATTTGGTGAGGTTAATGGGGTTCTGCCTCGAAGATCAAGAGAGTATACTTATCTATGAATATGTACCTAACAAGAGCCTTGATCACTTCCTATTTGGTATGCTAGTTCAACATTTATTTCTACTTGAATGTTATCTTTTATATCATAATTTGTTTTAG 1368 0.4583 MFQTKNITLPLILRNLTLITLTLTVLLTSQHASASVFDSVNCTTNATFTANSTFHVNLNTLLSYLTSNVTNRNNLRFFNATAASHDGSDAAVYGLFMCRGDVPLPLCRECVGFAAQNIASSCPSAKEAVIWYNECLLRYSDRFFFSTMDEWPRYQIKIPLGDPVVLHSKGFYNALGSIFNGIGNEAALALEASDNQYAVKQAAATAATTVYGLAQCTPDLSAADCRRCIVDAVAEFPRTCCGGSIGGSVMFPSCIVRYETYPFYQHSGTSETLTTSTNKGGRNSKAEVIAIVVVGFVILVMLLCIGYFYLGRKLKKRRLRIRKNLGPDMTASESLQFDLATVQFATNNFCEGSRVGKGGYGEVYKGILPSGEEIAVKRLSRNSGQGVEEFKNEVLLIAKLQHRNLVRLMGFCLEDQESILIYEYVPNKSLDHFLFGMLVQHLFLLECYLLYHNLF 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181270g00032 455 FunFam Cysteine-rich receptor-like protein kinase 10 161 263 - -
Stsc181270g00032 455 SUPERFAMILY Protein kinase-like (PK-like) 323 440 IPR011009 -
Stsc181270g00032 455 ProSiteProfiles Gnk2-homologous domain profile. 36 144 IPR002902 -
Stsc181270g00032 455 ProSitePatterns Protein kinases ATP-binding region signature. 355 377 IPR017441 GO:0005524
Stsc181270g00032 455 ProSiteProfiles Protein kinase domain profile. 349 455 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181270g00032 455 PANTHER CYSTEINE-RICH REPEAT SECRETORY PROTEIN 23 267 - -
Stsc181270g00032 455 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 312 424 - -
Stsc181270g00032 455 Gene3D - 165 263 IPR038408 -
Stsc181270g00032 455 Gene3D - 35 144 IPR038408 -
Stsc181270g00032 455 Pfam Salt stress response/antifungal 171 261 IPR002902 -
Stsc181270g00032 455 Pfam Salt stress response/antifungal 42 141 IPR002902 -
Stsc181270g00032 455 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 35 144 - -
Stsc181270g00032 455 ProSiteProfiles Gnk2-homologous domain profile. 152 263 IPR002902 -
Stsc181270g00032 455 Gene3D Phosphorylase Kinase; domain 1 311 424 - -
Stsc181270g00032 455 Pfam Protein tyrosine and serine/threonine kinase 353 434 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181270g00032 Stsc-Chr181270 143962 145900 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181270g00032 42 435 Receptor kinase-like Gene Family AT4G05200 39.568 2.08e-95 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc181270g00032 Stress-antifung 6.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181270g00032 - - gmx:100791642 528.094