Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181270g00028 ATGGCTTGGAATTGGATGAGGATAACCTTCAACCAACTTGCCTCAGTCGTATCTCTGCTGCTGCTCCTCAATTTTGCAACTACTGTGAAAGCACAAGGCCCCACTTACCTTTACAATATCTGCGCAGCCAACAAGACCACTCCCAACAGCCCCTTCAAAAAGGATCTCAACACTCTCTTATCATCCCTCTCTTCCAACGCCACCGCCAACGCCAACACCGACTTCTTCAACACCACCGTCCCCGGCACAAACCCCAACGACACAGCCTACGGCCTCTTCATGTGCAGAGGCGACTTCTCCTCTTGCGGGCAGTGCGTGGTCAACGCCAAACAGAAGCTTTCCTCTGACGTAGACTGTACCTTGTCAAAACAAGCCATCATCTGGTACGACGAGTGCATGGTTTGGTATTCCAGTAACCGCTCTATCTTCTCCACATTTGCCACCAGGCCTGGCGTTTACCTCTCCAACACGGGGAACGTCTCCAACCAGGAAAGCTTCATGAAGTTGTTGTTCAAAACCATGAACGAAACGGCACAAGTAGCAGCCAATTCCCCTGTTCTTGAAAAGAAGTACGCTACAAGGCAAGCCAACATATCTGGTTTTCAGAACCTTTATTGTATGGCTCAGTGCACTGATAACCTCACACCACAAGACTGTACAAGCTGTCTCACTGAAGCCATCACTGAATTAACTCCTTGCTGTAGTGGAAAGCAGGGAGGAAGGGTTCTATTCCCCAGCTGCTTCGTTAGGTATGAGTTGTACCCTTTCTATCGTTCTAATGCTTTGGCTCCTTCGCCTTCGCCTTCTTCGCCAGCAGGGGTTCCTCCTCCACCTGCAACTAATTCATCTAATTCCGGAGGAAGTAGTGGACTATCATCCGGGACTATTGTTGCAATTGTGGTTCCAATTGCCGTGGCTGTGATACTGTTTATTTTGGGTGTTTGTTTCATAAGTAGGAGAAGGGCAAGGAAGAAGCATGACTCTGCACAAGATCCACAAACTGTTTCCGGGATCTCTAGCGTTGATTCTTTGAGATTTGATTTGAGTACAATTGAAGCAGCCACAAAGAAATTCTCTCAAGATAATAAGCTTGGTGAAGGTGGATTTGGTGAGGTTTACAAGGGCTTGCTTCCAAGTGGACAAGAAGTAGCTGTTAAGAGGCTCTCTAAAGGATCTGTACAAGGTGGAGAAGAATTCAAGAATGAAGTAGAGCTGGTTGCCAGGCTTCAACATAGATATCTAGTCAGGCTTTTGGGATTTTGCTTGCAAGGAGAAGAAAAGATACTTGTCTATGAATATGTACCCAACAAAAGCTTGGATTACATTCTTTTCGATCCAGAGAAAAAAGGGTTGCTGAATTGGACAAGACGATACAAGATTATTGGAGGCATTGCTCGAGGAATTCAATATCTCCATGAAGATTCTAGGCTTAAAATCATACATCGTGATCTTAAACCTAGCAACATATTGTTGGACGAAGATATGAATCCAAAAATTGCAGATTTTGGTATGGCAAGGCTATTTGCTGTTGATCAAACTCAAGGAAATACTAGCAGGATTGTTGGGACATATGGATACATGGCCCCAGAATATGCGATGCATGGAGAGTTCTCAGTTAAGTCTGATGTATACAGTTTTGGAGTCCTTGTTTTGGAGATTTTAAGTGGCAAGAAGATCAGCTCTTTCTATCAAACAGATGCTGATGACCTTGTGAGCTATGCTTGGAAACTTTGGAAGGACGGAGCACCCTTAGAATTGATGGATCCCACGTTAAAAGAATCTTGTACTCCAAATGAAGTTATGAGATGCATCCATATTGGTTTACTCTGTGTCCAAGAAGATCCAGCAGATAGACCTACAATGGCGACAATAGTGCTTATGCTGGATAGTTATTCCGTTACTCTACCAGTACCTAATCAGCCAGCATTTTTCGTGAACAGCGGAACAGATTCGAACCTGCCCAAGGAGCTGCAATTCAGTGAAGCTGCAACCAATACATCCGTGCAAAATTCTGTCAATGAGATGTCGGTTAGCGAAATGGATCCTAGATAA 2052 0.4464 MAWNWMRITFNQLASVVSLLLLLNFATTVKAQGPTYLYNICAANKTTPNSPFKKDLNTLLSSLSSNATANANTDFFNTTVPGTNPNDTAYGLFMCRGDFSSCGQCVVNAKQKLSSDVDCTLSKQAIIWYDECMVWYSSNRSIFSTFATRPGVYLSNTGNVSNQESFMKLLFKTMNETAQVAANSPVLEKKYATRQANISGFQNLYCMAQCTDNLTPQDCTSCLTEAITELTPCCSGKQGGRVLFPSCFVRYELYPFYRSNALAPSPSPSSPAGVPPPPATNSSNSGGSSGLSSGTIVAIVVPIAVAVILFILGVCFISRRRARKKHDSAQDPQTVSGISSVDSLRFDLSTIEAATKKFSQDNKLGEGGFGEVYKGLLPSGQEVAVKRLSKGSVQGGEEFKNEVELVARLQHRYLVRLLGFCLQGEEKILVYEYVPNKSLDYILFDPEKKGLLNWTRRYKIIGGIARGIQYLHEDSRLKIIHRDLKPSNILLDEDMNPKIADFGMARLFAVDQTQGNTSRIVGTYGYMAPEYAMHGEFSVKSDVYSFGVLVLEILSGKKISSFYQTDADDLVSYAWKLWKDGAPLELMDPTLKESCTPNEVMRCIHIGLLCVQEDPADRPTMATIVLMLDSYSVTLPVPNQPAFFVNSGTDSNLPKELQFSEAATNTSVQNSVNEMSVSEMDPR 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181270g00028 683 SUPERFAMILY Protein kinase-like (PK-like) 343 649 IPR011009 -
Stsc181270g00028 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 479 491 IPR008271 GO:0004672|GO:0006468
Stsc181270g00028 683 SMART serkin_6 358 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181270g00028 683 CDD STKc_IRAK 364 629 - -
Stsc181270g00028 683 Gene3D Transferase(Phosphotransferase) domain 1 434 635 - -
Stsc181270g00028 683 Gene3D - 33 140 IPR038408 -
Stsc181270g00028 683 Gene3D - 151 256 IPR038408 -
Stsc181270g00028 683 MobiDBLite consensus disorder prediction 664 683 - -
Stsc181270g00028 683 FunFam cysteine-rich receptor-like protein kinase 10 434 635 - -
Stsc181270g00028 683 FunFam Cysteine-rich receptor-like protein kinase 25 150 256 - -
Stsc181270g00028 683 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 39 683 - -
Stsc181270g00028 683 MobiDBLite consensus disorder prediction 265 287 - -
Stsc181270g00028 683 ProSiteProfiles Protein kinase domain profile. 358 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181270g00028 683 FunFam Cysteine-rich receptor-like protein kinase 10 319 433 - -
Stsc181270g00028 683 ProSiteProfiles Gnk2-homologous domain profile. 148 256 IPR002902 -
Stsc181270g00028 683 Gene3D Phosphorylase Kinase; domain 1 318 433 - -
Stsc181270g00028 683 ProSiteProfiles Gnk2-homologous domain profile. 34 141 IPR002902 -
Stsc181270g00028 683 ProSitePatterns Protein kinases ATP-binding region signature. 364 386 IPR017441 GO:0005524
Stsc181270g00028 683 Pfam Salt stress response/antifungal 41 138 IPR002902 -
Stsc181270g00028 683 Pfam Salt stress response/antifungal 158 254 IPR002902 -
Stsc181270g00028 683 Pfam Protein kinase domain 359 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181270g00028 Stsc-Chr181270 115232 118358 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181270g00028 6 683 Receptor kinase-like Gene Family AT4G05200 50.870 0.0 660
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc181270g00028 Pkinase 5.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181270g00028 - - aip:107616499 1130.16