Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181270g00025 ATGCTACGCTACACCAACCTCTCCTTCTTGAACAACATAGTCCCTGGATTGGAACTCTCCAACGTGAACAACATCTCTCTCTCCGAGCTCCAACACTTCAACGATTTGTTGGCCACGACGCTGAAGGATATTGCTGCACAGGCTTCAAGCTCCAAGTTTGCTACCAAAGAAGCTGCCATCAGAGGGTCGCAGAAGCTCTACACGCTGGCGCAGTGTGTTCCTGACTTGTCCTCTTCTGACTGCAACACGTGCTTTCAAAGTGCCATCGCTTCCATTCCAACTGGGAAACAAGGCGCACGATCTCTGCTCCCAATTTGCTATATCAGATACGAGCTCTACCCATTTTACAACCAATCAGGGTCTTCCACTCAACCAGTTCTTCTTCCATCTTCAAAAGGAGGAAAGAGTAATATCTCTTTAATTGTTGCGATTGTTGCCCCTGTTTGTGTTGCTGCGGCACTTTTCATTCTTGGATGCTGCATCCTTCGTCAGAGGTCAAGGAAGAAGTATAATTCATTTGCCCGGGATTCAATTCGGGAGGATCTTACAGATGTCGAGTCGTTGCAGTTTGATTTCGCTACAATTGAAGCTGCCACCAACTGTTTCTCGGATGAGAACAAGATTGGGCAAGGCGGATTTGGTGTGGTTTATAAGGGTGTTCTCCCTAAAGGAGAGGAGATAGCAGTGAAGAGGCTGTCACTGACATCCTTGCAGGGTGCAGTAGAGTTCAGGAATGAAGCTACACTTGTGGCCAAGCTTCAACACAGAAACTTAGTGAGGCTCTTGGGATATTGCTTGGAGGGGCGTGAGAAGATGCTTGTCTATGAATATATACCAAACAAAAGCCTTGATCACTTTCTATTCGATCCTGTAAAGCAAAAAGAGTTAGATTGGTCTAGACGCTACAAGATTATAACTGGCATTGCGAGAGGAATTCTTTATCTACATGAAGATTCCCAACTTAGAATAATACACCGTGATCTCAAAGCTAGTAATGTTCTATTAGACGAGAACATGAACCCAAAGATTTCAGATTTTGGGATGGCAAAAATTTTTGAGGCTGATCAAACTCAAGTGAACACAGGAAGGATAGTTGGGACATATGGTTACATGTCACCAGAATATGCAATGCGTGGACAGTTTTCGGTAAAATCCGATATTTTCAGCTTTGGTGTCCTAGTTTTGGAGATTGTTAGTGGCAAGAGGAACACTGAGTTTTATCAAACACATCTTGCTGATGACCTCTTAAGCTATGCCTGGAAAAATTGGACACAGAATACGCCTCTGGAGCTGTTGGATCCAACACTGAGAGGCTCTTATTCAAGAAATGAAGTCATCAGATGCATCCATATTGGTTTATTATGTGTTCAGGAAAGTCCTTCAGCGAGGCCTACGATGGCGAATATTTTACTCATGCTTAACAGTGCTTCAGTCACCTTATCGTTACCACGACAACCGGCTTCTTTCCTGCATGGAAGAAAACCAAACAGGCCACAAGATGGCCATGATTCTGATCAGTTTACCACCTCTTCAATTCCTTGGTCTATCAATGAAGTATCCATCACTCAACTAGCCCCCCGGTGA 1584 0.4426 MLRYTNLSFLNNIVPGLELSNVNNISLSELQHFNDLLATTLKDIAAQASSSKFATKEAAIRGSQKLYTLAQCVPDLSSSDCNTCFQSAIASIPTGKQGARSLLPICYIRYELYPFYNQSGSSTQPVLLPSSKGGKSNISLIVAIVAPVCVAAALFILGCCILRQRSRKKYNSFARDSIREDLTDVESLQFDFATIEAATNCFSDENKIGQGGFGVVYKGVLPKGEEIAVKRLSLTSLQGAVEFRNEATLVAKLQHRNLVRLLGYCLEGREKMLVYEYIPNKSLDHFLFDPVKQKELDWSRRYKIITGIARGILYLHEDSQLRIIHRDLKASNVLLDENMNPKISDFGMAKIFEADQTQVNTGRIVGTYGYMSPEYAMRGQFSVKSDIFSFGVLVLEIVSGKRNTEFYQTHLADDLLSYAWKNWTQNTPLELLDPTLRGSYSRNEVIRCIHIGLLCVQESPSARPTMANILLMLNSASVTLSLPRQPASFLHGRKPNRPQDGHDSDQFTTSSIPWSINEVSITQLAPR 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181270g00025 527 ProSiteProfiles Gnk2-homologous domain profile. 15 115 IPR002902 -
Stsc181270g00025 527 ProSitePatterns Serine/Threonine protein kinases active-site signature. 323 335 IPR008271 GO:0004672|GO:0006468
Stsc181270g00025 527 ProSitePatterns Protein kinases ATP-binding region signature. 208 230 IPR017441 GO:0005524
Stsc181270g00025 527 SMART serkin_6 202 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181270g00025 527 Gene3D Phosphorylase Kinase; domain 1 162 277 - -
Stsc181270g00025 527 MobiDBLite consensus disorder prediction 489 510 - -
Stsc181270g00025 527 FunFam Cysteine-rich receptor-like protein kinase 10 162 277 - -
Stsc181270g00025 527 SUPERFAMILY Protein kinase-like (PK-like) 187 494 IPR011009 -
Stsc181270g00025 527 Gene3D - 17 115 IPR038408 -
Stsc181270g00025 527 Gene3D Transferase(Phosphotransferase) domain 1 278 482 - -
Stsc181270g00025 527 Pfam Protein tyrosine and serine/threonine kinase 205 470 IPR001245 GO:0004672|GO:0006468
Stsc181270g00025 527 FunFam cysteine-rich receptor-like protein kinase 10 278 480 - -
Stsc181270g00025 527 ProSiteProfiles Protein kinase domain profile. 202 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181270g00025 527 Pfam Salt stress response/antifungal 29 113 IPR002902 -
Stsc181270g00025 527 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 43 526 - -
Stsc181270g00025 527 CDD STKc_IRAK 208 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181270g00025 Stsc-Chr181270 108938 111774 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181270g00025 1 527 Receptor kinase-like Gene Family AT4G05200 53.273 0.0 573
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc181270g00025 PK_Tyr_Ser-Thr 1.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181270g00025 - - gmx:113000776 796.193