Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181270g00024 ATGGCTATGGCACCTTCAAGTTCACTACTTCTTTCTCTTCTTCTTATTATGCTTGTATCTCACACTACAGCCCAGCCAAGCTTCCTGTACCATTTCTGCATGAATGATAAAGGAAACTACACAGAAAACAGTGCATACCACACCAACCTCAACACTCTTTTGTCCACTTTGTCTTCCAATACACAAGTTGATTATGGCTTCTACAACTTCTCTCAGGGACAAGGCTCTGACAAAGTTAATGCAATTGGGCTGTGTAGAGGAGATGTTAAGCCTGATTCTTGCCGCAGTTGTCTCAATGATTCCAGAGTCCTTCTGACACACCGTTGTCCGAATCAGAAGGAAGCTATAGGCTGGTATGACAACTGCATGCTGCGCTACTCGAACCGGTCCATATTTGACACCATGGAACCTGACCCTACCTACCTTCTGTGGGCTGGACAAAATGCAACTGATATGAATCAGTTCATTCAAGTGCTTAGAGACTTGCTTGATAGCCTTAGAACAAAAGCAGCATCAGGTGGTTCCCTTAAAAAGTATGCTGCCGGAAGCACGGCCGGGCCAAGCTTCCAGACTATATTTGCTCTTCTGCAATGCACTCCTGATTTATCAGAGCAAGATTGTGATGATTGCTTGGTCAGGGCCACCTCAGATATCAATGATCGTTGTTATGGCTTGACAAATTGCAGAATTGGAAAACCAAGCTGCAATCTTAGATTTGATACTTCATCCTTCTTTAACTCTACGGCAGATGCTTCTCCGCCGTCGCCATCTAAAGCATCTCCACCTACTCCAGCCACCAATACCAACTCCACTTCTACCAAAGGAAAGAGCAACTCAACAGTTATTATCATTGCAGTGGTAGTGCCAACTTTTCTTATTTTTATACTGCTCATCTCGGTCTGCATCTTCATAAGAGCAAGGAAGAGCAAGAGAAGTTTTCACAATCACAATGACACTGAAGTTAACAATGAAATTGAACCTACCGATACATTGCAATTCAACTTTGACACCATCAGAACGGCTACAAATAACTTTTCAGAAGAAAATAAGCTAGGACGAGGAGGATTTGGACCTGTTTTCAAGGGCAAGCTTTCTAATGGAAGAGAAATTGCAGTCAAAAGGCTGTCAATGAATTCAGGGCAAGGAGATACAGAATTTAAGAATGAAGTGCTTTTAGTGGCCAAGCTTCAGCACCGCAATTTAGTTAGGCTACTTGGTTTTTGCTTGGAAAGAAAAGAAAGATTACTTGTTTATGAGTTTGTTCCTAATAAAAGTCTTGATTACTTCATATTTGATCCAATCAAGCGTGCTCATCTGGATTGGGAAAAGCGATACAAAATCATTGGAGGCATAGCTAAAGGCCTTCTTTATCTTCACGAGGATTCGCGCCTGCGAATTATTCATCGTGACCTTAAAGCAAGTAACATTCTTTTAGACGAAGAAATGAATCCGAAAATATCAGATTTTGGCATGGCAAGATTGTTTCTTGTGGATCAAACTCAAGGAAACACAAATAGAGTTGTTGGAACATATGGATACATGGCACCTGAGTATGTAATGCAAGGACAATTCTCTGTGAAGTCAGATGTCTTTAGTTTCGGCGTCATGCTTCTAGAGATAGTAAGTGGCCAGAAAAACAGTGGCTTCCACAATGGAGAGGATGTGGAGGACCTAATAAGCTTTGTAAGTCTCTTCCTTCTTCTCACAATCTTCATTTTTAGTACCAATTGA 1731 0.4148 MAMAPSSSLLLSLLLIMLVSHTTAQPSFLYHFCMNDKGNYTENSAYHTNLNTLLSTLSSNTQVDYGFYNFSQGQGSDKVNAIGLCRGDVKPDSCRSCLNDSRVLLTHRCPNQKEAIGWYDNCMLRYSNRSIFDTMEPDPTYLLWAGQNATDMNQFIQVLRDLLDSLRTKAASGGSLKKYAAGSTAGPSFQTIFALLQCTPDLSEQDCDDCLVRATSDINDRCYGLTNCRIGKPSCNLRFDTSSFFNSTADASPPSPSKASPPTPATNTNSTSTKGKSNSTVIIIAVVVPTFLIFILLISVCIFIRARKSKRSFHNHNDTEVNNEIEPTDTLQFNFDTIRTATNNFSEENKLGRGGFGPVFKGKLSNGREIAVKRLSMNSGQGDTEFKNEVLLVAKLQHRNLVRLLGFCLERKERLLVYEFVPNKSLDYFIFDPIKRAHLDWEKRYKIIGGIAKGLLYLHEDSRLRIIHRDLKASNILLDEEMNPKISDFGMARLFLVDQTQGNTNRVVGTYGYMAPEYVMQGQFSVKSDVFSFGVMLLEIVSGQKNSGFHNGEDVEDLISFVSLFLLLTIFIFSTN 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181270g00024 576 Pfam TMEM154 protein family 259 315 IPR028064 -
Stsc181270g00024 576 FunFam Cysteine-rich receptor-like protein kinase 10 139 244 - -
Stsc181270g00024 576 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 26 131 - -
Stsc181270g00024 576 Gene3D Transferase(Phosphotransferase) domain 1 421 566 - -
Stsc181270g00024 576 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 30 561 - -
Stsc181270g00024 576 ProSiteProfiles Protein kinase domain profile. 345 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181270g00024 576 Gene3D Phosphorylase Kinase; domain 1 305 420 - -
Stsc181270g00024 576 FunFam Cysteine-rich receptor-like protein kinase 10 306 420 - -
Stsc181270g00024 576 Gene3D - 25 130 IPR038408 -
Stsc181270g00024 576 Gene3D - 139 244 IPR038408 -
Stsc181270g00024 576 Pfam Protein kinase domain 346 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181270g00024 576 MobiDBLite consensus disorder prediction 248 275 - -
Stsc181270g00024 576 SUPERFAMILY Protein kinase-like (PK-like) 325 567 IPR011009 -
Stsc181270g00024 576 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Stsc181270g00024 576 SMART serkin_6 345 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181270g00024 576 FunFam Os11g0601500 protein 421 567 - -
Stsc181270g00024 576 ProSiteProfiles Gnk2-homologous domain profile. 137 244 IPR002902 -
Stsc181270g00024 576 Pfam Salt stress response/antifungal 147 241 IPR002902 -
Stsc181270g00024 576 Pfam Salt stress response/antifungal 33 128 IPR002902 -
Stsc181270g00024 576 ProSiteProfiles Gnk2-homologous domain profile. 28 131 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181270g00024 Stsc-Chr181270 104911 107837 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181270g00024 36 562 Receptor kinase-like Gene Family AT4G21410 53.407 0.0 549
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc181270g00024 Pkinase 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181270g00024 - - gmx:102662291 855.129