Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181270g00021 ATGGCTGCCATTGCCAAAGCTTCTAAAAACTTGTTCTCATTTCTTTCTCTCCTTGTCTTCTTCACTTCTCTAGCCACCTCTCAACCAGATTTTGTACACTCTATCTGTGAAGACAACAATGGTAACTACACTGCTAACAGTACCTACCATTCAAACCTCAATACCCTCTTGTCCAACCTCTCTTCTGACATTGGAACCAGCAACAATTTCCGTTTCTACAATATCTCCAATGGCGAAAACACAGACAAAGTTAACCTGATTTGGATGTGCAGAGGAGATGTTACTAAAGACGATTGCCTTAGCTGTTTGAACAATTCAAGAATCCTTCTGCCAGAGGTTTGTCCAAACCAGAAGGAGGCAACAGGGTTTTATGATTACTGCATGCTGCGCTACTCGAGCCAGTCCATATTTGGGGTCCTGGATTCCAATATGTGGGCGATACATAACTTAAGGAATGTAAATGATGTGAATGATTTCAACCAAGTTGCTGGAGACTTGATGCAAAGTCTAAGAAGCAAAGCTGCTGCAGTTTCTGGTGATTCTTCTCTGGTCAAGTTTGCTGCAGGAAAAGCCAAAGTAGGATCCAGATTTGAAACCGTTACCGTTTATGCTCATGTACAGTGCACTAATGATTTGTCAGAGCTACAATGCAATGATTGCTTGGTTGGAGAAATTTCCTACATCCCAACATGCTGTAATGGAACAGTCCGTGCAAGAGTTTTTGCCCCCAGTTGTAATCTTAGATATGACACCACCCCTTACTTTGATTCTCTAAGCGGCGATCTACCACCTCAACCATCTCCTTCTCCTACTCCAACTCCATCATCCACTACTGATGCCACTGTTACGCTCAAACAAGGAAAGAACTCATCATCAGCAACTGTGATTGCCATAGTTGTAACGGTCGTCTCCCTTATTATTGTACTTCTCATCACCTTTGTCTGTATCTATTTCAAAAGGAAGAAGAAACCAACAAAGTATTCTCGAAGTCAAGGTGCATTAGAAGCTGATGACTGCGAATTTGAATCTACTGAGACATTACAATTCGACTTTCAAACCATGGTGGAGGCTACAAATAACTTCTCGGTTGCAAATAAACTTGGAGAAGGTGGATTTGGACTTGTCTACAAGGGTAGGCTACCAAATGGCGAAGAGGTTGCTATCAAAAGATTGTCTAGGAATTCTCAGCAAGGAGACATAGAATTCAAGAATGAGCTGCTGTTGGTAGCAAAGCTTCAGCATCGAAATTTGGCAAGGCTACTTGGCTTTTGTTTGGAAACAGGAGAGAGGATGCTGGTCTACGAGTTTCTTCCCAATAAAAGCCTTGATTACTTCATATTTGATCCAATCAAGCGTTTAATTTTGGATTGGGATGGACGCTATAAGATTATAGTTGGAATCGCTCGAGGTCTTCTTTATCTTCACGAGGATTCTCAACTACGAATTATCCATCGTGATCTAAAAGCAAGCAACATACTCTTGGATGATAATATGAACGCAAAGATATCAGACTTTGGCATGGCAAGGTTGTTTGTTGAGGATCAAACTCAAGGAAACACACTTAGAGTAGTTGGAACCCTTGGTTATATAGCACCTGAATATGCATCGAATGGACATTTTTCAATAAAATCAGATGTATTTAGTTTCGGTGTACTGCTCCTTGAGATAGTGAGTGGACGCAGAAATGGAGACATCCACAATGGCGAAGAGTATGCAGAACATCTAATAAGCTTTGTAAGATTCCTATCTTTTACATACCAATTTCTTAACCATAAAATAGTCCATAATATTTTACATTTGAGGAAAAGAAAAAAAGAAGTTAAATATTCTTGTATCTATTGA 1842 0.4017 MAAIAKASKNLFSFLSLLVFFTSLATSQPDFVHSICEDNNGNYTANSTYHSNLNTLLSNLSSDIGTSNNFRFYNISNGENTDKVNLIWMCRGDVTKDDCLSCLNNSRILLPEVCPNQKEATGFYDYCMLRYSSQSIFGVLDSNMWAIHNLRNVNDVNDFNQVAGDLMQSLRSKAAAVSGDSSLVKFAAGKAKVGSRFETVTVYAHVQCTNDLSELQCNDCLVGEISYIPTCCNGTVRARVFAPSCNLRYDTTPYFDSLSGDLPPQPSPSPTPTPSSTTDATVTLKQGKNSSSATVIAIVVTVVSLIIVLLITFVCIYFKRKKKPTKYSRSQGALEADDCEFESTETLQFDFQTMVEATNNFSVANKLGEGGFGLVYKGRLPNGEEVAIKRLSRNSQQGDIEFKNELLLVAKLQHRNLARLLGFCLETGERMLVYEFLPNKSLDYFIFDPIKRLILDWDGRYKIIVGIARGLLYLHEDSQLRIIHRDLKASNILLDDNMNAKISDFGMARLFVEDQTQGNTLRVVGTLGYIAPEYASNGHFSIKSDVFSFGVLLLEIVSGRRNGDIHNGEEYAEHLISFVRFLSFTYQFLNHKIVHNILHLRKRKKEVKYSCIY 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181270g00021 613 FunFam Cysteine-rich receptor-like protein kinase 10 143 254 - -
Stsc181270g00021 613 FunFam Lectin-domain containing receptor kinase A4.3 437 608 - -
Stsc181270g00021 613 Gene3D Phosphorylase Kinase; domain 1 322 436 - -
Stsc181270g00021 613 Pfam Salt stress response/antifungal 36 133 IPR002902 -
Stsc181270g00021 613 Pfam Salt stress response/antifungal 154 251 IPR002902 -
Stsc181270g00021 613 SUPERFAMILY Protein kinase-like (PK-like) 344 585 IPR011009 -
Stsc181270g00021 613 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 26 591 - -
Stsc181270g00021 613 Pfam Protein tyrosine and serine/threonine kinase 363 561 IPR001245 GO:0004672|GO:0006468
Stsc181270g00021 613 ProSiteProfiles Gnk2-homologous domain profile. 141 254 IPR002902 -
Stsc181270g00021 613 ProSitePatterns Protein kinases ATP-binding region signature. 367 389 IPR017441 GO:0005524
Stsc181270g00021 613 Gene3D Transferase(Phosphotransferase) domain 1 437 610 - -
Stsc181270g00021 613 ProSiteProfiles Gnk2-homologous domain profile. 31 136 IPR002902 -
Stsc181270g00021 613 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 29 136 - -
Stsc181270g00021 613 SMART serkin_6 361 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181270g00021 613 Gene3D - 142 254 IPR038408 -
Stsc181270g00021 613 Gene3D - 28 135 IPR038408 -
Stsc181270g00021 613 ProSiteProfiles Protein kinase domain profile. 361 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181270g00021 613 MobiDBLite consensus disorder prediction 258 281 - -
Stsc181270g00021 613 FunFam Cysteine-rich receptor-like protein kinase 10 320 436 - -
Stsc181270g00021 613 ProSitePatterns Serine/Threonine protein kinases active-site signature. 482 494 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181270g00021 Stsc-Chr181270 97244 100126 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181270g00021 29 579 Receptor kinase-like Gene Family AT4G21410 47.443 7.53e-159 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc181270g00021 PK_Tyr_Ser-Thr 4.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181270g00021 - - gmx:100782266 686.411