Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181270g00020 ATGGCTGCCATTGCCAAAGCTTCTAAAAACTTGTTCTCATTTCTTTCTCTCCTTGTCTTCTTCACTTCTCTAGCCACCTCTCAACCAGATTTTGTACACTCTATCTGTGAAGACAACAATGGTAACTACACTGCTAACAGTACCTACCATTCAAACCTCAATACCCTCTTGTCCAACCTCTCTTCTGACATTGGAACCAGCAACAATTTCCGTTTCTACAATATCTCCAATGGCGAAAACACAGACAAAGTTAACCTGATTTGGATGTGCAGAGGAGATGTTACTAAAGACGATTGCCTTAGCTGTTTGAACAATTCAAGAATCCTTCTGCCAGAGGTTTGTCCAAACCAGAAGGAGGCAACAGGGTTTTATGATTACTGCATGCTGCGCTACTCGAGCCAGTCCATATTTGGGGTCCTGGATTCCAATATGTGGGCGATACATAACTTAAGGAATGTAAATGATGTGAATGATTTCAACCAAGTTGCTGGAGACTTGATGCAAAGTCTAAGAAGCAAAGCTGCTGCAGTTTCTGGTGATTCTTCTCTGGTCAAGTTTGCTGCAGGAAAAGCCAAAGTAGGATCCAGATTTGAAACCGTTACCGTTTATGCTCATGTACAGTGCACTAATGATTTGTCAGAGCTACAATGCAATGATTGCTTGGTTGGAGAAATTTCCTACATCCCAACATGCTGTAATGGAACAGTCCGTGCAAGAGTTTTTGCCCCCAGTTGTAATCTTAGATATGACACCACCCCTTACTTTGATTCTCTAAGCGGCGATCTACCACCTCAACCATCTCCTTCTCCTACTCCAACTCCATCATCCACTACTGATGCCACTGTTACGCTCAAACAAGGAAAGAACTCATCATCAGCAACTGTGATTGCCATAGTTGTAACGGTCGTCTCCCTTATTATTGTACTTCTCATCACCTTTGTCTGTATCTATTTCAAAAGGAAGAAGAAACCAACAAAGTATTCTCGAAGTCAAGGTGCATTAGAAGCTGATGACTGCGAATTTGAATCTACTGAGACATTACAATTCGACTTTCAAACCATGGTGGAGGCTACAAATAACTTCTCGGTTGCAAATAAACTTGGAGAAGGTGGATTTGGACTTGTCTACAAGGGTAGGCTACCAAATGGCGAAGAGGTTGCTATCAAAAGATTGTCTAGGAATTCTCAGCAAGGAGACATAGAATTCAAGAATGAGCTGCTGTTGGTAGCAAAGCTTCAGCATCGAAATTTGGCAAGGCTACTTGGCTTTTGTTTGGAAACAGGAGAGAGGATGCTGGTCTACGAGTTTCTTCCCAATAAAAGCCTTGATTACTTCATATTTGATCCAATCAAGCGTTTAATTTTGGATTGGGATGGACGCTATAAGATTATAGTTGGAATCGCTCGAGGTCTTCTTTATCTTCACGAGGATTCTCAACTACGAATTATCCATCGTGATCTAAAAGCAAGCAACATACTCTTGGATGATAATATGAACGCAAAGATATCAGACTTTGGCATGGCAAGGTTGTTTGTTGAGGATCAAACTCAAGGAAACACACTTAGAGTAGTTGGAACCCTTGGTTATATAGCACCTGAATATGCATCGAATGGACATTTTTCAATAAAATCAGATGTATTTAGTTTCGGTGTACTGCTCCTTGAGATAGTGAGTGGACGCAGAAATGGAGACATCCACAATGGCGAAGAGTATGCAGAACATCTAATAAGCTTTATATGGAGAAAATGGAATGAAGATTCTGGCTCAGATATTGTAGATCCAACATTGGATAGTAGATTCAGAAATCAAATAATGAGATGCATCCATATCGGATTGTTATGCGTTCAAGAAAATGTAGCTGATAGACCAAGCATGGCTACGGTTGCAATGATGCTTAATAGCGACTCCCTGACTCTTCCAATGCCCTCAAGAGCAGCATATGCTGTTATGAATAATGCTGGAGATTCATCAAATAGCGAAAGATTAGGTGAATCAAGAAACTACGCTCTACAAGAATCATCAGGCGCAAATGAGGCTTCGATTACTGAGCTCTATCCCCGTTAG 2064 0.4109 MAAIAKASKNLFSFLSLLVFFTSLATSQPDFVHSICEDNNGNYTANSTYHSNLNTLLSNLSSDIGTSNNFRFYNISNGENTDKVNLIWMCRGDVTKDDCLSCLNNSRILLPEVCPNQKEATGFYDYCMLRYSSQSIFGVLDSNMWAIHNLRNVNDVNDFNQVAGDLMQSLRSKAAAVSGDSSLVKFAAGKAKVGSRFETVTVYAHVQCTNDLSELQCNDCLVGEISYIPTCCNGTVRARVFAPSCNLRYDTTPYFDSLSGDLPPQPSPSPTPTPSSTTDATVTLKQGKNSSSATVIAIVVTVVSLIIVLLITFVCIYFKRKKKPTKYSRSQGALEADDCEFESTETLQFDFQTMVEATNNFSVANKLGEGGFGLVYKGRLPNGEEVAIKRLSRNSQQGDIEFKNELLLVAKLQHRNLARLLGFCLETGERMLVYEFLPNKSLDYFIFDPIKRLILDWDGRYKIIVGIARGLLYLHEDSQLRIIHRDLKASNILLDDNMNAKISDFGMARLFVEDQTQGNTLRVVGTLGYIAPEYASNGHFSIKSDVFSFGVLLLEIVSGRRNGDIHNGEEYAEHLISFIWRKWNEDSGSDIVDPTLDSRFRNQIMRCIHIGLLCVQENVADRPSMATVAMMLNSDSLTLPMPSRAAYAVMNNAGDSSNSERLGESRNYALQESSGANEASITELYPR 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181270g00020 687 Gene3D Transferase(Phosphotransferase) domain 1 437 639 - -
Stsc181270g00020 687 SUPERFAMILY Protein kinase-like (PK-like) 346 644 IPR011009 -
Stsc181270g00020 687 CDD STKc_IRAK 367 633 - -
Stsc181270g00020 687 SMART serkin_6 361 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181270g00020 687 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 27 684 - -
Stsc181270g00020 687 ProSiteProfiles Gnk2-homologous domain profile. 141 254 IPR002902 -
Stsc181270g00020 687 ProSitePatterns Protein kinases ATP-binding region signature. 367 389 IPR017441 GO:0005524
Stsc181270g00020 687 Gene3D - 142 254 IPR038408 -
Stsc181270g00020 687 Gene3D - 28 135 IPR038408 -
Stsc181270g00020 687 ProSiteProfiles Gnk2-homologous domain profile. 31 136 IPR002902 -
Stsc181270g00020 687 Pfam Salt stress response/antifungal 154 251 IPR002902 -
Stsc181270g00020 687 Pfam Salt stress response/antifungal 36 133 IPR002902 -
Stsc181270g00020 687 FunFam cysteine-rich receptor-like protein kinase 10 437 639 - -
Stsc181270g00020 687 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 29 136 - -
Stsc181270g00020 687 ProSiteProfiles Protein kinase domain profile. 361 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181270g00020 687 FunFam Cysteine-rich receptor-like protein kinase 10 143 254 - -
Stsc181270g00020 687 FunFam Cysteine-rich receptor-like protein kinase 10 320 436 - -
Stsc181270g00020 687 Gene3D Phosphorylase Kinase; domain 1 322 436 - -
Stsc181270g00020 687 Pfam Protein tyrosine and serine/threonine kinase 363 628 IPR001245 GO:0004672|GO:0006468
Stsc181270g00020 687 MobiDBLite consensus disorder prediction 258 281 - -
Stsc181270g00020 687 ProSitePatterns Serine/Threonine protein kinases active-site signature. 482 494 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181270g00020 Stsc-Chr181270 97244 100126 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181270g00020 29 687 Receptor kinase-like Gene Family AT4G21410 47.407 0.0 565
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc181270g00020 PK_Tyr_Ser-Thr 1.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181270g00020 - - gmx:100782266 787.719