LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc181270g00018	ATGCAAGTTGTAACTCCTCACTCTCACTTCCAATCCCAAACATTCCCTAACACAAACACAATGACACCAAAATCAATCACACCTTCTCTCTGTTTCCTCTTCCTCCTCCTTCTCTTCACGGTGGCCTCCGCCGTGCCAAGTTTCTTGAACTACAGCTGCGTCACGGCCAACGACCAAGCCTCCACCACCTACCTCAACAACCTCAACATCCTCCTAACCAACCTCACTTCCGACACTCAAATCGACTACGGCTTCTACACTTCCTCCTTCGGCGAAAACAGTGACACAGCATACGCTATTGGCATGTGCAGAGGGGACGTCAAACTCAACGATTGCCGAAGCTGCCTCAACGATTCAAGACTCCTCCTCACTCAGATATGTCCTAACCACCAAGCCGTTGGCTGGTACGAATACTGCATGCTTCGCTACTCCAACCGCTCCATACTCAGAACAGTTGAGAATTATCCACAATTCCCTATGTGGAATCCGTACTTCGTTTCTTCCAAAGAGTTCAATCAGTTCAACAAATCATTGAAGACCTTGATGGACAAGATGAGAATCGAAGCTTCTGGAGGTGACTATCGTCGTAAGTACGCCTTCGAAAACGTGACTTCTGGAATTCAAAGTTTCAAGTACATATTTGGCCTTGCACAGTGCACACCTGATTTGTCTCGACAACAGTGCGACGATTGCTTGTCTGGGGCATTTTCGGAAATTCCAAGTTGTTGTAACGGTAGGAGAGGTGCCAGGGTTATCAAACCCAGTTGTAACATTAGATATGAAATCTACCCTTTCTTGACGTCTACCATTGATGCACTCTCACCTTTAAACACTCCAGGAAAAGACAGCAATACAACACGAACCATAGTCACCATAGTTGCTGTTGTTGCTGCTGTTACTTTGGCGCTCAGTTCTATGTACGTCTATTTAAGACTGAGGATGTCAAGAAAGAATTTTCGAAATGAAGAATCTGATGAGGAAATTATAGCTGATGAATCCTTACAGTTCACCTTTGATACCATTAGAGTTGCTACAGAGGATTTCTCATATTCTAATAAACTAGGGGAAGGTGGATTTGGAGCTGTTTATAAGGGTACGCTCTCCAATGGACAAATGATTGCTGTGAAGAGGTTATCCAAGGACTCAGACCAAGGAGATATAGAATTCAGGAATGAAGTGCAGTTATTAGCTGATCTTCAACACGAAAATTTAGTTAAGCTACTTGGTTTTTGTTTGAAAGGAAGCGAAAGGTTACTTATCTATGAATTTGTTCCTAATAAAAGCCTTGATTACTTCCTATTTGATCCAAGCAAGCCAGGACAATTGGATTGGATAAAGAGATTCAAAATCATTGAAGGTATTGCACGAGCGTTACTTTATCTTCATGAGGATTGTAGAACACGTATTATACACCGAGACCTCAAACCAAGCAACATTCTCTTAGATGAAGAGATGAATGCTAAGTTATCAGATTTTGGATTGGCACGATTATTTATTGTGGATCAAAATCAAGGAAAGACAAGTAAAATTGTTGGCACCTAG	1542	0.4235	MQVVTPHSHFQSQTFPNTNTMTPKSITPSLCFLFLLLLFTVASAVPSFLNYSCVTANDQASTTYLNNLNILLTNLTSDTQIDYGFYTSSFGENSDTAYAIGMCRGDVKLNDCRSCLNDSRLLLTQICPNHQAVGWYEYCMLRYSNRSILRTVENYPQFPMWNPYFVSSKEFNQFNKSLKTLMDKMRIEASGGDYRRKYAFENVTSGIQSFKYIFGLAQCTPDLSRQQCDDCLSGAFSEIPSCCNGRRGARVIKPSCNIRYEIYPFLTSTIDALSPLNTPGKDSNTTRTIVTIVAVVAAVTLALSSMYVYLRLRMSRKNFRNEESDEEIIADESLQFTFDTIRVATEDFSYSNKLGEGGFGAVYKGTLSNGQMIAVKRLSKDSDQGDIEFRNEVQLLADLQHENLVKLLGFCLKGSERLLIYEFVPNKSLDYFLFDPSKPGQLDWIKRFKIIEGIARALLYLHEDCRTRIIHRDLKPSNILLDEEMNAKLSDFGLARLFIVDQNQGKTSKIVGT	513

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc181270g00018	513	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 10	46	148	-	-
	Stsc181270g00018	513	ProSiteProfiles	Protein kinase domain profile.	348	513	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc181270g00018	513	SMART	serkin_6	348	511	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc181270g00018	513	ProSitePatterns	Protein kinases ATP-binding region signature.	354	376	IPR017441	GO:0005524
	Stsc181270g00018	513	ProSiteProfiles	Gnk2-homologous domain profile.	46	148	IPR002902	-
	Stsc181270g00018	513	FunFam	Cysteine-rich receptor-like protein kinase 10	156	265	-	-
	Stsc181270g00018	513	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	469	481	IPR008271	GO:0004672\|GO:0006468
	Stsc181270g00018	513	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase B120	424	513	-	-
	Stsc181270g00018	513	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	48	513	-	-
	Stsc181270g00018	513	Gene3D	Transferase(Phosphotransferase) domain 1	424	513	-	-
	Stsc181270g00018	513	Gene3D	-	160	265	IPR038408	-
	Stsc181270g00018	513	Gene3D	-	45	147	IPR038408	-
	Stsc181270g00018	513	Pfam	Salt stress response/antifungal	170	262	IPR002902	-
	Stsc181270g00018	513	Pfam	Salt stress response/antifungal	56	145	IPR002902	-
	Stsc181270g00018	513	ProSiteProfiles	Gnk2-homologous domain profile.	154	265	IPR002902	-
	Stsc181270g00018	513	SUPERFAMILY	Protein kinase-like (PK-like)	329	513	IPR011009	-
	Stsc181270g00018	513	Gene3D	Phosphorylase Kinase; domain 1	310	423	-	-
	Stsc181270g00018	513	Pfam	Protein kinase domain	350	513	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc181270g00018	513	FunFam	Cysteine-rich receptor-like protein kinase 10	312	423	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc181270g00018	Stsc-Chr181270	81836	83943	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc181270g00018	29	513	Receptor kinase-like Gene Family	AT4G05200	44.181	5.96e-136	407

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Stsc181270g00018		Pkinase	6.4e-35	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc181270g00018	-		-	cave:132170294	541.191