Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181270g00016 ATGATATCTATAGAAAATAATTTAGGATTCATAGAACAGTTCGCTTTGCAAGTAGAAGATTTCCGATCGTACTGGTGCGACAATGGCAAAGGAAACTACACAGCAAACAGCACCTACCACAAAAACCTCAACACCCTTTTCTCCACTCTCATTTCCAACTCTACTCAAATCGACTACGGTTTCTACAACTTGTCGTACGGCCAACAAGACGATAACAAAGCAAACGCCGTTGGGCTTTGCCAAGGAGACCTCAACCAAAACGATTGTCTCCGCTGCCTCAACAATTCAATAACCCTTCTCACAAAGCTTTGTCCAAATCAGAAGGAAGCCATAGGCTGGTACGACAGCTGCATGCTCCGCTACTCAAACCGCACCATCTTCGGCAACCACCACGTTGATGACTACCCTAAGTTTTACCTGTGGAACCCCAACAACGCCACGGACTTGGCCGTGTTTAATCAAGATCTCAAGAGCTTGATGTCGAAGCTAATAGATAAGGCCATTGCCGGTGACTCTCGCCAGAAATACGCGGCGGGGAGCGTCAACGTTACGGTGTTTCAAAACATATATGGGGTTGCGCAGTGCACGCCGGATCTGTCTAGCCTAGAGTGTGACCAATGCTTGGAGGGGCATGTCTCAGAGATCCCTAATTGTTGTGATGGTAAGAGAGGTGGGAGGGTTCTTTCTCCGAGTTGTTACATTAGATATGAAGCCTACCCCTTCTTTCAGTCTACTGCCGCCGATAATGCTCCGCCTCCGTTATCGTTGTTGTCACCCCCACGGCATTCCTCGTCTACCCCTACTCCCTCTCCGGAAGGTCAAGGTCAAGGAAAGAGCAACACATTGCGAATTGTGATCTTCGTAGCAGTGCCAACTGTGATTGTTTTGGCGCTCATCGGTTTTACATGCATCTATTTATCAAGAGTAAGAAAGCCAAGGAAGATTTCTGAAAGCAAGTCTGATGATGAAGGTGTAGATGAAGAAGAGATTATAACCAACGAGTCATTGCAATTTGACTTTGATACCATACGAGTTGCAACAGATGATTTCTCATATTCCAATAAACTAGGACAAGGTGGATTTGGAGCTGTTTATAAGGGTAGACTCTCCAATAGACAAATGATTGCTGTCAAAAGGTTGTCAAGGGACTCAGGACAAGGAGCTACGGAATTTAAGAATGAAGTGCTTTTATTGGTCAAACTTCAACATCGAAATTTAGTTAAACTCCTTGGTTTTTGTTTGGAAGGAAGTGAAAGATTACTTGTTTATGAATTCGTTCCTAACAAAAGTCTTGATTACTTCATATTTGATCCTATCAAGAGAGGCCAATTGAATTGGACGAGCCGATATAAAATCATTGAAGGTGTTGCTCGAGCTCTTCTTTATCTTCATGAAGATTCTAGGCTGCGTATTATACACCGTGATCTCAAAACAAGTAATATCCTCTTGGACGATAATATGAATCCTAAGATAGCAGATTTTGGATTGGCAAGATTGTTTGGGATGGATCAAACTCAAGGAAATACTAGTCGAATTGCAGGAACCTAG 1548 0.4341 MISIENNLGFIEQFALQVEDFRSYWCDNGKGNYTANSTYHKNLNTLFSTLISNSTQIDYGFYNLSYGQQDDNKANAVGLCQGDLNQNDCLRCLNNSITLLTKLCPNQKEAIGWYDSCMLRYSNRTIFGNHHVDDYPKFYLWNPNNATDLAVFNQDLKSLMSKLIDKAIAGDSRQKYAAGSVNVTVFQNIYGVAQCTPDLSSLECDQCLEGHVSEIPNCCDGKRGGRVLSPSCYIRYEAYPFFQSTAADNAPPPLSLLSPPRHSSSTPTPSPEGQGQGKSNTLRIVIFVAVPTVIVLALIGFTCIYLSRVRKPRKISESKSDDEGVDEEEIITNESLQFDFDTIRVATDDFSYSNKLGQGGFGAVYKGRLSNRQMIAVKRLSRDSGQGATEFKNEVLLLVKLQHRNLVKLLGFCLEGSERLLVYEFVPNKSLDYFIFDPIKRGQLNWTSRYKIIEGVARALLYLHEDSRLRIIHRDLKTSNILLDDNMNPKIADFGLARLFGMDQTQGNTSRIAGT 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181270g00016 515 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 27 515 - -
Stsc181270g00016 515 Pfam Protein kinase domain 352 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181270g00016 515 FunFam Cysteine-rich receptor-like protein kinase 10 136 241 - -
Stsc181270g00016 515 SMART serkin_6 350 513 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181270g00016 515 MobiDBLite consensus disorder prediction 259 277 - -
Stsc181270g00016 515 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 19 126 - -
Stsc181270g00016 515 ProSiteProfiles Protein kinase domain profile. 350 515 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181270g00016 515 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 426 515 - -
Stsc181270g00016 515 ProSiteProfiles Gnk2-homologous domain profile. 134 241 IPR002902 -
Stsc181270g00016 515 Gene3D - 19 125 IPR038408 -
Stsc181270g00016 515 Gene3D - 136 241 IPR038408 -
Stsc181270g00016 515 Pfam Salt stress response/antifungal 145 239 IPR002902 -
Stsc181270g00016 515 Pfam Salt stress response/antifungal 26 123 IPR002902 -
Stsc181270g00016 515 ProSitePatterns Protein kinases ATP-binding region signature. 356 378 IPR017441 GO:0005524
Stsc181270g00016 515 FunFam Cysteine-rich receptor-like protein kinase 10 311 425 - -
Stsc181270g00016 515 SUPERFAMILY Protein kinase-like (PK-like) 331 514 IPR011009 -
Stsc181270g00016 515 Gene3D Phosphorylase Kinase; domain 1 312 425 - -
Stsc181270g00016 515 MobiDBLite consensus disorder prediction 252 277 - -
Stsc181270g00016 515 Gene3D Transferase(Phosphotransferase) domain 1 426 515 - -
Stsc181270g00016 515 ProSiteProfiles Gnk2-homologous domain profile. 21 126 IPR002902 -
Stsc181270g00016 515 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181270g00016 Stsc-Chr181270 75284 80648 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181270g00016 32 515 Receptor kinase-like Gene Family AT4G05200 48.980 7.25e-153 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc181270g00016 Pkinase 1.1e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181270g00016 - - ahf:112776564 639.032