Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181270g00009 ATGGAGACGTTTAAGCAGAGAAAGAAAACCACAGGGCGTAAGAAAATTGAGATCAAGAAGCTTGTCAATGAAGCAAATAAGCAAGTAACCTTCTCCAAGAGGCGTGCCGGAATGTTCAAGAAAGCCAGTGAGCTATGCATATTATGCAACGCTGGCGTTGCCATCGTAGTGTTCTCGCCGGCCGACAAGTTATTCTGCTTTGGAGAGCCCAGCACGGAGGCGGTGGTCAACCGGTACCTCAAAGGAGCACCAGAGTTTGAGCCAATAAAGCCCTCAAAAGGTAAGAAGCCGGTGTCATGTGAAGAGCATAACAGGAAATATGACGAGGCGATGAAGGTGTTGGAGTTGGAAAAGAAGAAAAAGTCTGATGTTGAAGGCCTTGCTAAGGTTTGGGGAAGGGGGGAATGGTGGAACGAGGAGATTCATGAGATGAGTGTTGAGCAGTTGGAGCAGTTTTTGGTAGCCATTTTTGACTTAAGGAGTAGGCTTCTTAAAAGGGCTACAGAAATCATGATGATGCATGGTATGTTATAG 534 0.4625 METFKQRKKTTGRKKIEIKKLVNEANKQVTFSKRRAGMFKKASELCILCNAGVAIVVFSPADKLFCFGEPSTEAVVNRYLKGAPEFEPIKPSKGKKPVSCEEHNRKYDEAMKVLELEKKKKSDVEGLAKVWGRGEWWNEEIHEMSVEQLEQFLVAIFDLRSRLLKRATEIMMMHGML 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181270g00009 177 CDD MADS_MEF2_like 12 82 IPR033896 GO:0000977|GO:0045944
Stsc181270g00009 177 Gene3D - 23 86 IPR036879 GO:0003677|GO:0046983
Stsc181270g00009 177 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
Stsc181270g00009 177 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 23 67 IPR002100 GO:0003677|GO:0046983
Stsc181270g00009 177 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
Stsc181270g00009 177 Coils Coil 100 120 - -
Stsc181270g00009 177 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Stsc181270g00009 177 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Stsc181270g00009 177 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Stsc181270g00009 177 PANTHER MADS BOX PROTEIN 13 162 - -
Stsc181270g00009 177 FunFam Agamous-like MADS-box protein AGL62 23 87 - -
Stsc181270g00009 177 SUPERFAMILY SRF-like 12 81 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181270g00009 Stsc-Chr181270 52075 52608 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181270g00009 8 152 Type I MADS-box Gene Family AT5G60440 42.000 1.76e-35 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Stsc181270g00009 SRF-TF 1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181270g00009 - - cam:101502875 221.861