Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181270g00008 ATGTCCAAGAAAAAGTCAAGCTTAGGTCGCCAGAAGATCCCAATTGAAAAAATCCCAAAAAAGAGTCACCTTCAAGTTACATTCTCTAAGCGGCGTTCAGGGCTATTCAAGAAAGCCAGCGAACTTTGCACCCTTTGCGGCGTCGAGATAACCATCGTGGTTTTCTCGCCGGCCGATAAGGCCTTCTCCTTTGGGCATCCGGAGGTTGAATCTATCATCGATCGGTATCTGGTTTTGAACCCTCCGCATGAATCCATGTCCAGCACTCAACAGCTTGTTGAGGCGCATAGAAACGCCAACCTTCGTGATCTTAACATGCAACTGACTCAGCTTCTGAACCATTTGGAGATGGAGAAGAAGCGTGCGGAGGAGCTTGATCACGTGAGGAAAGTGAGGCAGAGGCAGTTTTGGTGGGAAAGGCCTGTTGATAATCTTGGGCTTCATGAATTGCTGCAACTAAAAGCATCAATTGAGGAGCTCAAGAAGAATTTGTCAAAACATGCCAACAAAATCATCATCATGGACCAAACCAACATGCCTTCGCAAATCATTGGGGTTAATAATAATAATATTATTAATAATATTAATAATCATTATGATCATGGCTTTGATAACAACAAATCTGATGCTGCTGCAGCCTTCATCAATGGTGCTTCCACACTTCCTCCTCCTAATAATAATGCTTATTACATGGGTTTTCGTCATGGTTATCTCTAA 717 0.431 MSKKKSSLGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEITIVVFSPADKAFSFGHPEVESIIDRYLVLNPPHESMSSTQQLVEAHRNANLRDLNMQLTQLLNHLEMEKKRAEELDHVRKVRQRQFWWERPVDNLGLHELLQLKASIEELKKNLSKHANKIIIMDQTNMPSQIIGVNNNNIINNINNHYDHGFDNNKSDAAAAFINGASTLPPPNNNAYYMGFRHGYL 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181270g00008 238 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Stsc181270g00008 238 SUPERFAMILY SRF-like 9 91 IPR036879 GO:0003677|GO:0046983
Stsc181270g00008 238 CDD MADS_MEF2_like 9 87 IPR033896 GO:0000977|GO:0045944
Stsc181270g00008 238 Coils Coil 98 125 - -
Stsc181270g00008 238 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Stsc181270g00008 238 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Stsc181270g00008 238 Gene3D - 21 85 IPR036879 GO:0003677|GO:0046983
Stsc181270g00008 238 Gene3D - 87 188 - -
Stsc181270g00008 238 Coils Coil 150 170 - -
Stsc181270g00008 238 PANTHER MADS BOX PROTEIN 10 167 - -
Stsc181270g00008 238 FunFam Agamous-like MADS-box protein AGL62 20 86 - -
Stsc181270g00008 238 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Stsc181270g00008 238 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Stsc181270g00008 238 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181270g00008 Stsc-Chr181270 46971 47687 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181270g00008 5 238 Type I MADS-box Gene Family AT5G60440 44.715 3.27e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Stsc181270g00008 SRF-TF 2.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181270g00008 - - gmx:100781526 300.056