Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181270g00006 ATGTCCACTTCCAAGAAAAGCCGCGGCCGCCAAAGGATCGAGATGAAGAAGATGAGCAATGAGAGCAACCTCCAAGTCACCTTTTCCAAGCGCCGTGGTGGATTGTTTAACAAAGCTAGTGAGCTTTGCACTCTCTGCGGCGCTGAGGTGGCACTCATCGTGTTTTCTCCGGGCGAGAAAGTCTTCTCCTTTGGCCACCCAAACGTTCAATCAATCATAGATCGCTACCTGCTCATGCATGATGCCGGAGCGCATAACCCAGGCACCATGCAGTTCATGGAGGCGCAGCAAACTGCCAGCGTGTGCGAGCTGAATGAGCAGCTCACACGAATTAACGGCCAACTGGAGGCCGAGAAAAAACGTGGCGAAGAACTAAGCCGCCTTCAGGAGGCTCTCATGAGCCAGTACTGGTGGGCCTTGCCCGTTGATCAAATGGGCAAGACCCAACTGGACCAAATGAAGGCGGCTTTAGAGGAACTCAAGAAGAGTACCATATGCTATGCCGAAAGGCTCCATATGCAAGGCATGGTTTCTAACCCTGCTACTCAATTCCTTGGTCTGCCATCTTCAAGTGATGTGCATCACCGACCTAATCCTTTCCCAACACCATCAACTCATCAAGTGCCTCAACTATTTGGATCACCTATTCTTCAACCTATGACTCATAACGGCGAGAACACTATCATGCATAATCCCATGTTTGATTGGAACATGATGCACCAACAACATGGGTTTAACATCAACACTAGCATGGGAGGGTTTGGACCTATGAATGGGTTTTTTTGA 786 0.4949 MSTSKKSRGRQRIEMKKMSNESNLQVTFSKRRGGLFNKASELCTLCGAEVALIVFSPGEKVFSFGHPNVQSIIDRYLLMHDAGAHNPGTMQFMEAQQTASVCELNEQLTRINGQLEAEKKRGEELSRLQEALMSQYWWALPVDQMGKTQLDQMKAALEELKKSTICYAERLHMQGMVSNPATQFLGLPSSSDVHHRPNPFPTPSTHQVPQLFGSPILQPMTHNGENTIMHNPMFDWNMMHQQHGFNINTSMGGFGPMNGFF 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181270g00006 261 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Stsc181270g00006 261 Coils Coil 105 125 - -
Stsc181270g00006 261 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Stsc181270g00006 261 MobiDBLite consensus disorder prediction 1 20 - -
Stsc181270g00006 261 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Stsc181270g00006 261 Gene3D - 20 86 IPR036879 GO:0003677|GO:0046983
Stsc181270g00006 261 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Stsc181270g00006 261 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Stsc181270g00006 261 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Stsc181270g00006 261 PANTHER MADS BOX PROTEIN 10 163 - -
Stsc181270g00006 261 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Stsc181270g00006 261 FunFam Agamous-like MADS-box protein AGL62 20 86 - -
Stsc181270g00006 261 SUPERFAMILY SRF-like 9 82 IPR036879 GO:0003677|GO:0046983
Stsc181270g00006 261 Gene3D - 88 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181270g00006 Stsc-Chr181270 40436 41221 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181270g00006 5 179 Type I MADS-box Gene Family AT5G60440 53.977 8.24e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Stsc181270g00006 SRF-TF 2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181270g00006 - - aip:107616132 387.497