Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181270g00004 ATGTCGAGTGCAAGAAGTAGCGCAAGGAAAACCAGGGGTCGCCAAAAGATTGAGATGAAGAAGATGAACAATGAGAGCAACCTCCAAGTCACGTTCTCCAAGCGTCGCAGCGGCTTGTTCAAGAAAGCCAGCGAGCTTTGCACCCTCTGCGGTGCTGACGTGGCACTCATTGTGTTTTCTCCCGGTGACAAAGTCTTTTCCTTCGGTCACCCAAACGTTGAAACCGTTATTCAACGTTACCTGGCGCGTGCCCCCACGCTGCAAACCCCATCCGGCACTTTGCAGTTCATTGAGGCCCACCGCAGCGCCAATGTCCGTGAGTTCAATTCTCGCCTCATGCAACTCAACAACCAACTCGAAGCCGAGAAGAAGCGCGCTGATCACTTGAATAATTTCCATAAGGCCGCCATGAGTCAGTTCTGGTGGGCCTTGCCCATTGAAAATATGAGCAAGACCCGACTCCAACAGCTCAAGGCGGCACTTGAGGACCTTAAGAAGAATGTCGTGCAACATGCGGAAAGACTCTTTGTTCAGGAAAGTGTTAACAACAACCCCACTCAATTCTTTGGCGAGTCATCTTCGAATGCTCTCGTGCCACATCATCAGTCTCCTCCCCCGCCTCCGCCGCTGCCGGCACCTTTTACTCAAGTTCCTCAGTTATTTGGTAATGGTCCACAGTTGCTACAGCCACCGATGCTTCATCAGAGCCCCCCTGTGATGCAAAATCATATGTTTGATTCGTCCGTGATGCGTCACCATGGGTTAAACATGAACAACATCCCTCCATTTGGATCTCCGGCTGGATTCCTTTGA 813 0.5117 MSSARSSARKTRGRQKIEMKKMNNESNLQVTFSKRRSGLFKKASELCTLCGADVALIVFSPGDKVFSFGHPNVETVIQRYLARAPTLQTPSGTLQFIEAHRSANVREFNSRLMQLNNQLEAEKKRADHLNNFHKAAMSQFWWALPIENMSKTRLQQLKAALEDLKKNVVQHAERLFVQESVNNNPTQFFGESSSNALVPHHQSPPPPPPLPAPFTQVPQLFGNGPQLLQPPMLHQSPPVMQNHMFDSSVMRHHGLNMNNIPPFGSPAGFL 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181270g00004 270 ProSiteProfiles MADS-box domain profile. 12 72 IPR002100 GO:0003677|GO:0046983
Stsc181270g00004 270 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 21 68 IPR002100 GO:0003677|GO:0046983
Stsc181270g00004 270 FunFam Agamous-like MADS-box protein AGL62 24 89 - -
Stsc181270g00004 270 CDD MADS_MEF2_like 13 81 IPR033896 GO:0000977|GO:0045944
Stsc181270g00004 270 SUPERFAMILY SRF-like 13 85 IPR036879 GO:0003677|GO:0046983
Stsc181270g00004 270 PRINTS MADS domain signature 34 49 IPR002100 GO:0003677|GO:0046983
Stsc181270g00004 270 PRINTS MADS domain signature 49 70 IPR002100 GO:0003677|GO:0046983
Stsc181270g00004 270 PRINTS MADS domain signature 14 34 IPR002100 GO:0003677|GO:0046983
Stsc181270g00004 270 Gene3D - 92 197 - -
Stsc181270g00004 270 SMART madsneu2 12 71 IPR002100 GO:0003677|GO:0046983
Stsc181270g00004 270 Coils Coil 105 132 - -
Stsc181270g00004 270 Coils Coil 147 174 - -
Stsc181270g00004 270 Gene3D - 24 91 IPR036879 GO:0003677|GO:0046983
Stsc181270g00004 270 PANTHER MADS BOX PROTEIN 14 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181270g00004 Stsc-Chr181270 26798 27610 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181270g00004 8 196 Type I MADS-box Gene Family AT5G60440 52.105 4.32e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Stsc181270g00004 SRF-TF 1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181270g00004 - - aip:107616132 281.567