Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181269g00055 ATGGTGTCAAGATCTTATTCAAATCTACTGGAGCTGGCATCAGGTGAGTCTCCATCATTTGGGAGCATCAACAGGAGAATCCCTCGTATTATGACTGTGGCTGGTTTGATATCTGATGTTGATGATGAGAGTGTGTGCTCTGACCCTTCTTCTTCCTCCGTCCACCGTGACAGGATCATCATAGTGGCCAATCAGCTCCCTATAAGGGCTCACAGAAAGCCAGATGGTAACACCAACTGGTTCTTCAATTGGGATGACAATTCACTCCTCCTCCAACTCAAAGATGGCTTAGGTGATGATGACACTGAGGTTATCTATGTCGGTTGCCTCAAAGAAGAAGTGCCTCCAAATGAACAAGATGAGGTTTCTCAGATACTTCTCGACACTTTCAAGTGTGTCCCCACTTTTCTCCCTCCTGATCTCTTCACCAGGTACTACCATGGCTTCTGCAAGCAACAGTTATGGCCACTGTTCCATTACATGCTGCCTTTGTCACCAGACCTTGGCGGCAGGTTCAACAGGTCACTCTGGCAGGCTTATGTATCTGTCAACAAAATCTTTGCAGATAGGATTATGGAAGTTATTAACCCTGAGGATGATTATGTCTGGATACATGATTATCATCTCATGGTGTTGCCCACTTTCTTGAGGAAGAGATTTAACAGAGTCAAACTTGGATTTTTCCTACATAGTCCTTTCCCTTCATCAGAAATATACAAGACATTGCCTATTAGGGAAGAACTCCTCAGAGCACTTTTGAATTCGGATTTGATTGGATTCCACACCTTTGATTATGCAAGGCATTTTCTCTCATGTTGTGGCAGGATGCTTGGTCTAACCTATGAGTCCAAAAGGGGTTATATTGGGATTGAGTATTATGGTAGAACTGTTAGTATCAAGATTCTTCCGGTTGGCATTCACTTGGGACAGCTTCAATCGGTTTTGAGCATGTCCAAGACTGAGGAGAAAGTTTCTGAGCTCATTACACAGTTTACTGATCAAGGCAAGATAATGTTACTTGGTGTTGATGACATGGACATCTTTAAGGGAATAAGTTTGAAGCTATTGGCAATGGAGCAGCTCCTGATTCAGCACCCTGAGTGGGAGGGAAAAGTTGTGTTGGTTCAGATAGCTAACCCTGCAAGGGGAAGAGGGAAGGATGTGAAGGAAGTGCAGGCTGAGACTAAGGCTACCGTGAAACGAATAAACGAAACGTTTGGGAAGCCAGGGTATGATCCTGTTATTCTTATTGAAGAGCCACTCAGGTTTTATGAGAAAGTTGCTTACTATGTTGTTGCTGAGTGTTGTTTGGTGACTGCAGTGAGGGATGGAATGAATCTCATACCATATGAATACATAATCAGTCGCCAAGGGAATGATAGGCTGGACAAAGTTTTGGGAGTAGGTTCCTCCCCAAAGAAAAGCATGTTGGTTGTGTCTGAATTCATTGGTTGCTCGCCGTCTTTGAGTGGGGCAATCAGAGTGAACCCTTGGAACATTGATGCTGTGGCAGATGCAATGGACTCTGCCCTTGAAATGGCTGATTTGGAGAAACAGCTTCGGCATGAGAAGCATTATAGATATGTTAGTACTCATGATGTGGGGTACTGGGCACGCAGCTTCTTGCAAGATTTGGAAAGGACTTGTGGCGATCATGTGCGGCGAAGGTGGTGGGGGATTGGGTTTGGATTGAGTTTTAGAGTTGTGGCACTTGATCCAAACTTCAGAAAGCTCTCAATGGAGCACATAGTTTCGGCTTACAAGAGGACAACAACTAGAGCCATACTTCTTGATTACGATGGTACATTGGTGCCTCAGGCTTCCATTGATAAGAGCCCAACAAGTAACTCCATTAAGATGCTTAACAGTTTGTGTAGGGATAAGAACAACATGGTGTTTCTCGTCAGTGCTAGAAGCCGGAACACACTTGCAGAATGGTTTTCTCCTTGTGAGAATCTGGGAATTGCTGCTGAGCATGGTTACTTTCTAAGATTGAAAGGAGATTCAGCATGGGAAACATGTGGACCTGCTATAGATTGTAGTTGGAAACAAATTGCCGAACCTGTAATGAAGCTTTATACAGAAACAACTGATGGATCCACCATTGAAGATAAGGAAACTGCACTTGTTTGGTGCTATGAGGATGCAGATCCGGATTTCGGGNNNNNNNNNNCTAAGGAACTTCTTGATCATCTTGAAAGTGTGCTTGCAAATGAACCTGTTACAGTCAAGAGTGGACAGAACAATGTGGAGGTTAAACCACAGGGTGTAAGCAAAGGGCTTGTAGCAAAGAGGCTGCTTTCCATGATGCATGAGAATGGAATGTCTCCTGATTTTGTTTTGTGTATCGGAGATGACCGGTCCGACGAAGACATGTTCGAAGTAATCACCACTTCGATGGCGACAACCCCAAGGGCTGAAGTATTTGCATGTACTGTTGGTAAAAAGCCAAGCAAGGCTAAGTATTACCTTGATGATACTGCTGAAATTGTGAGATTGGTGCATGGTTTGGCTTCTGTTTCGGAGCAAACGGTGTTACTCTAG 2544 0.4395 MVSRSYSNLLELASGESPSFGSINRRIPRIMTVAGLISDVDDESVCSDPSSSSVHRDRIIIVANQLPIRAHRKPDGNTNWFFNWDDNSLLLQLKDGLGDDDTEVIYVGCLKEEVPPNEQDEVSQILLDTFKCVPTFLPPDLFTRYYHGFCKQQLWPLFHYMLPLSPDLGGRFNRSLWQAYVSVNKIFADRIMEVINPEDDYVWIHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYKTLPIREELLRALLNSDLIGFHTFDYARHFLSCCGRMLGLTYESKRGYIGIEYYGRTVSIKILPVGIHLGQLQSVLSMSKTEEKVSELITQFTDQGKIMLLGVDDMDIFKGISLKLLAMEQLLIQHPEWEGKVVLVQIANPARGRGKDVKEVQAETKATVKRINETFGKPGYDPVILIEEPLRFYEKVAYYVVAECCLVTAVRDGMNLIPYEYIISRQGNDRLDKVLGVGSSPKKSMLVVSEFIGCSPSLSGAIRVNPWNIDAVADAMDSALEMADLEKQLRHEKHYRYVSTHDVGYWARSFLQDLERTCGDHVRRRWWGIGFGLSFRVVALDPNFRKLSMEHIVSAYKRTTTRAILLDYDGTLVPQASIDKSPTSNSIKMLNSLCRDKNNMVFLVSARSRNTLAEWFSPCENLGIAAEHGYFLRLKGDSAWETCGPAIDCSWKQIAEPVMKLYTETTDGSTIEDKETALVWCYEDADPDFGXXXXKELLDHLESVLANEPVTVKSGQNNVEVKPQGVSKGLVAKRLLSMMHENGMSPDFVLCIGDDRSDEDMFEVITTSMATTPRAEVFACTVGKKPSKAKYYLDDTAEIVRLVHGLASVSEQTVLL 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181269g00055 847 NCBIfam HAD-IIB family hydrolase 595 799 IPR006379 -
Stsc181269g00055 847 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 29 838 IPR001830 GO:0003824|GO:0005992
Stsc181269g00055 847 SUPERFAMILY HAD-like 593 835 IPR036412 -
Stsc181269g00055 847 CDD GT20_TPS 58 546 IPR001830 GO:0003824|GO:0005992
Stsc181269g00055 847 Pfam Trehalose-phosphatase 596 827 IPR003337 GO:0003824|GO:0005992
Stsc181269g00055 847 CDD HAD_TPP 594 832 - -
Stsc181269g00055 847 Pfam Glycosyltransferase family 20 58 546 IPR001830 GO:0003824|GO:0005992
Stsc181269g00055 847 FunFam Alpha,alpha-trehalose-phosphate synthase 314 530 - -
Stsc181269g00055 847 FunFam Trehalose-6-phosphate synthase 2 676 755 - -
Stsc181269g00055 847 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 51 312 - -
Stsc181269g00055 847 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 592 709 - -
Stsc181269g00055 847 Gene3D - 592 719 IPR023214 -
Stsc181269g00055 847 Gene3D - 723 845 IPR023214 -
Stsc181269g00055 847 FunFam Trehalose-6-phosphate synthase 10 723 846 - -
Stsc181269g00055 847 Gene3D Glycogen Phosphorylase B; 50 313 - -
Stsc181269g00055 847 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 57 548 - -
Stsc181269g00055 847 Gene3D Glycogen Phosphorylase B; 314 530 - -
Stsc181269g00055 847 NCBIfam trehalose-phosphatase 592 837 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181269g00055 Stsc-Chr181269 223225 226837 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181269g00055 1 843 Trehalose Biosynthesis Gene Families AT1G68020 80.465 0.0 1451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181269g00055 K16055 - cave:132176996 1489.94