Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181269g00054 ATGGTGTCAAGATCTTATTCAAATCTACTGGAGCTGGCATCAGGTGAGTCTCCATCATTTGGGAGCATCAACAGGAGAATCCCTCGTATTATGACTGTGGCTGGTTTGATATCTGATGTTGATGATGAGAGTGTGTGCTCTGACCCTTCTTCTTCCTCCGTCCACCGTGACAGGATCATCATAGTGGCCAATCAGCTCCCTATAAGGGCTCACAGAAAGCCAGATGGTAACACCAACTGGTTCTTCAATTGGGATGACAATTCACTCCTCCTCCAACTCAAAGATGGCTTAGGTGATGATGACACTGAGGTTATCTATGTCGGTTGCCTCAAAGAAGAAGTGCCTCCAAATGAACAAGATGAGGTTTCTCAGATACTTCTCGACACTTTCAAGTGTGTCCCCACTTTTCTCCCTCCTGATCTCTTCACCAGGTACTACCATGGCTTCTGCAAGCAACAGTTATGGCCACTGTTCCATTACATGCTGCCTTTGTCACCAGACCTTGGCGGCAGGTTCAACAGGTCACTCTGGCAGGCTTATGTATCTGTCAACAAAATCTTTGCAGATAGGATTATGGAAGTTATTAACCCTGAGGATGATTATGTCTGGATACATGATTATCATCTCATGGTGTTGCCCACTTTCTTGAGGAAGAGATTTAACAGAGTCAAACTTGGATTTTTCCTACATAGTCCTTTCCCTTCATCAGAAATATACAAGACATTGCCTATTAGGGAAGAACTCCTCAGAGCACTTTTGAATTCGGATTTGATTGGATTCCACACCTTTGATTATGCAAGGCATTTTCTCTCATGTTGTGGCAGGATGCTTGGTCTAACCTATGAGTCCAAAAGGGGTTATATTGGGATTGAGTATTATGGTAGAACTGTTAGTATCAAGATTCTTCCGGTTGGCATTCACTTGGGACAGCTTCAATCGGTTTTGAGCATGTCCAAGACTGAGGAGAAAGTTTCTGAGCTCATTACACAGTTTACTGATCAAGGCAAGATAATGTTACTTGGTGTTGATGACATGGACATCTTTAAGGGAATAAGTTTGAAGCTATTGGCAATGGAGCAGCTCCTGATTCAGCACCCTGAGTGGGAGGGAAAAGTTGTGTTGGTTCAGATAGCTAACCCTGCAAGGGGAAGAGGGAAGGATGTGAAGGAAGTGCAGGCTGAGACTAAGGCTACCGTGAAACGAATAAACGAAACGTTTGGGAAGCCAGGGTATGATCCTGTTATTCTTATTGAAGAGCCACTCAGGTTTTATGAGAAAGTTGCTTACTATGTTGTTGCTGAGTGTTGTTTGGTGACTGCAGTGAGGGATGGAATGAATCTCATACCATATGAATACATAATCAGTCGCCAAGGGAATGATAGGCTGGACAAAGTTTTGGGAGTAGGTTCCTCCCCAAAGAAAAGCATGTTGGTTGTGTCTGAATTCATTGGTTGCTCGCCGTCTTTGAGTGGGGCAATCAGAGTGAACCCTTGGAACATTGATGCTGTGGCAGATGCAATGGACTCTGCCCTTGAAATGGCTGATTTGGAGAAACAGCTTCGGCATGAGAAGCATTATAGATATGTTAGTACTCATGATGTGGGGTACTGGGCACGCAGCTTCTTGCAAGATTTGGAAAGGACTTGTGGCGATCATGTGCGGCGAAGGTGGTGGGGGATTGGGTTTGGATTGAGTTTTAGAGTTGTGGCACTTGATCCAAACTTCAGAAAGCTCTCAATGGAGCACATAGTTTCGGCTTACAAGAGGACAACAACTAGAGCCATACTTCTTGATTACGATGGTACATTGGTGCCTCAGGCTTCCATTGATAAGAGCCCAACAAGTAACTCCATTAAGATGCTTAACAGTTTGTGTAGGGATAAGAACAACATGGTGTTTCTCGTCAGTGCTAGAAGCCGGAACACACTTGCAGAATGGTTTTCTCCTTGTGAGAATCTGGGAATTGCTGCTGAGCATGGTTACTTTCTAAGATTGAAAGGAGATTCAGCATGGGAAACATGTGGACCTGCTATAGATTGTAGTTGGAAACAAATTGCCGAACCTGTAATGAAGCTTTATACAGAAACAACTGATGGATCCACCATTGAAGATAAGGAAACTGCACTTGTTTGGTGCTATGAGGATGCAGATCCGGATTTCGGGNNNNNNNNNNCTAAGGAACTTCTTGATCATCTTGAAAGTGTGCTTGCAAATGAACCTGTTACAGTCAAGAGTGGACAGAACAATGTGGAGGTTAAACCACAGGTGTGTAGTGCCAAATGA 2283 0.438 MVSRSYSNLLELASGESPSFGSINRRIPRIMTVAGLISDVDDESVCSDPSSSSVHRDRIIIVANQLPIRAHRKPDGNTNWFFNWDDNSLLLQLKDGLGDDDTEVIYVGCLKEEVPPNEQDEVSQILLDTFKCVPTFLPPDLFTRYYHGFCKQQLWPLFHYMLPLSPDLGGRFNRSLWQAYVSVNKIFADRIMEVINPEDDYVWIHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYKTLPIREELLRALLNSDLIGFHTFDYARHFLSCCGRMLGLTYESKRGYIGIEYYGRTVSIKILPVGIHLGQLQSVLSMSKTEEKVSELITQFTDQGKIMLLGVDDMDIFKGISLKLLAMEQLLIQHPEWEGKVVLVQIANPARGRGKDVKEVQAETKATVKRINETFGKPGYDPVILIEEPLRFYEKVAYYVVAECCLVTAVRDGMNLIPYEYIISRQGNDRLDKVLGVGSSPKKSMLVVSEFIGCSPSLSGAIRVNPWNIDAVADAMDSALEMADLEKQLRHEKHYRYVSTHDVGYWARSFLQDLERTCGDHVRRRWWGIGFGLSFRVVALDPNFRKLSMEHIVSAYKRTTTRAILLDYDGTLVPQASIDKSPTSNSIKMLNSLCRDKNNMVFLVSARSRNTLAEWFSPCENLGIAAEHGYFLRLKGDSAWETCGPAIDCSWKQIAEPVMKLYTETTDGSTIEDKETALVWCYEDADPDFGXXXXKELLDHLESVLANEPVTVKSGQNNVEVKPQVCSAK 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181269g00054 760 SUPERFAMILY HAD-like 593 755 IPR036412 -
Stsc181269g00054 760 Gene3D Glycogen Phosphorylase B; 314 530 - -
Stsc181269g00054 760 Pfam Trehalose-phosphatase 596 760 IPR003337 GO:0003824|GO:0005992
Stsc181269g00054 760 CDD GT20_TPS 58 546 IPR001830 GO:0003824|GO:0005992
Stsc181269g00054 760 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 29 756 IPR001830 GO:0003824|GO:0005992
Stsc181269g00054 760 FunFam Trehalose-6-phosphate synthase 2 676 755 - -
Stsc181269g00054 760 FunFam Alpha,alpha-trehalose-phosphate synthase 314 530 - -
Stsc181269g00054 760 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 51 312 - -
Stsc181269g00054 760 Pfam Glycosyltransferase family 20 58 546 IPR001830 GO:0003824|GO:0005992
Stsc181269g00054 760 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 592 709 - -
Stsc181269g00054 760 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 57 548 - -
Stsc181269g00054 760 Gene3D - 595 674 IPR023214 -
Stsc181269g00054 760 Gene3D Glycogen Phosphorylase B; 50 313 - -
Stsc181269g00054 760 Gene3D - 675 755 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181269g00054 Stsc-Chr181269 222601 226837 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181269g00054 1 758 Trehalose Biosynthesis Gene Families AT1G68020 80.959 0.0 1308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181269g00054 K16055 - cit:102609352 1350.11